Browse Element(s) Details


Os.11530.1.S1_at

Description gb:AK063862.1
DB_XREF= gi:32973880
TID=Os.11530.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D12, full insert sequence.
FL= gb:AK063862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g318201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31790Os.49826.1.S1_at11/114+18833215..18850327expressed protein
LOC_Os04g31790OsAffx.21285.1.S1_at1/114+18833215..18850327expressed protein
LOC_Os04g31804OsAffx.26276.1.S1_at11/114+18855336..18871258SRF-type transcription factor family protein, expressed
LOC_Os04g31820Os.11530.1.S1_at1/114+18874450..18874659hypothetical protein
LOC_Os04g31840NANA4+18877570..18877842hypothetical protein
LOC_Os04g31850Os.28943.1.S1_x_at1/114+18880171..18883395retrotransposon protein, putative, unclassified
LOC_Os04g31860NANA4+18884022..18890211retrotransposon protein, putative, unclassified
LOC_Os04g31870NANA4+18893117..18893329expressed protein
LOC_Os04g31880NANA4+18897066..18898996hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11530.1.S1_at--497--8031Chr04:18874540..18874564 (25 bp)
GGAGTTCGGGAGCTTCCACACCAGC
LOC_Os04g31820
Os.11530.1.S1_at--395--9951Chr04:18874437..18874461 (25 bp)
TACGCCGGCTAGCTATGTACTACTC
NONE
Os.11530.1.S1_at--521--751Chr04:18874423..18874447 (25 bp)
ATGTACTACTCCTTTCACTGATTGA
NONE
Os.11530.1.S1_at--849--6411Chr04:18874363..18874387 (25 bp)
GATCTCGCGTGTGTGTTTGCTGTAC
NONE
Os.11530.1.S1_at--794--7471Chr04:18874353..18874377 (25 bp)
GTGTGTTTGCTGTACTAGATGTCAT
NONE
Os.11530.1.S1_at--812--7131Chr04:18874333..18874357 (25 bp)
GTCATACTGTCATGTCAGGTCGCTT
NONE
Os.11530.1.S1_at--733--3471Chr04:18874318..18874342 (25 bp)
CAGGTCGCTTGTGTTGTACTAGTAC
NONE
Os.11530.1.S1_at--172--9071Chr04:18874171..18874195 (25 bp)
TGCATCATCGATCGCTTTTCTTTTT
NONE
Os.11530.1.S1_at--347--10611NONE
TTCTGTTTATTTCCTTCGCGTTTGA
NONE
Os.11530.1.S1_at--1132--9331Chr04:18874117..18874141 (25 bp)
TCGCGTTTGATACTTGGATTGGGAA
NONE
Os.11530.1.S1_at--821--8151Chr04:18874096..18874120 (25 bp)
GGAAAATGCGATCTGTTCTTTGTTC
NONE
Target Sequence 
GGAGTTCGGGAGCTTCCACACCAGCGGCCTCGCCATCATCGTCCACGCCGTCCTCTACTTCGCACTCCTCACCATCTTCC
TCATCGCCATCGGCGTCCACATCTACGCCGGCTAGCTATGTACTACTCCTTTCACTGATTGATTTTGGTGGATTGGTTGG
TTGTCTGGTGAATTGGGGATCTCGCGTGTGTGTTTGCTGTACTAGATGTCATACTGTCATGTCAGGTCGCTTGTGTTGTA
CTAGTACGGCAGAATCAAAGGGTGTGTAGTAATTCTCTTTTGTTCATCTGATTAGTACTAGTACTACTAATTTGGTGCTG
TACTACTGTGATATTGTTTCAGTGTTTTTGGTTGTACTAGCTAATTAGTTGCATCATCGATCGCTTTTCTTTTTTTTTTT
TTTTGGTTCTGTTTATTTCCTTCGCGTTTGATACTTGGATTGGGAAAATGCGATCTGTTCTTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis