Browse Element(s) Details


OsAffx.26276.1.S1_at

Description tigr:9632.m03029
TID=OsAffx.26276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3180411/11SRF-type transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31790Os.49826.1.S1_at11/114+18833215..18850327expressed protein
LOC_Os04g31790OsAffx.21285.1.S1_at1/114+18833215..18850327expressed protein
LOC_Os04g31804OsAffx.26276.1.S1_at11/114+18855336..18871258SRF-type transcription factor family protein, expressed
LOC_Os04g31820Os.11530.1.S1_at1/114+18874450..18874659hypothetical protein
LOC_Os04g31840NANA4+18877570..18877842hypothetical protein
LOC_Os04g31850Os.28943.1.S1_x_at1/114+18880171..18883395retrotransposon protein, putative, unclassified
LOC_Os04g31860NANA4+18884022..18890211retrotransposon protein, putative, unclassified
LOC_Os04g31870NANA4+18893117..18893329expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010154biological_processfruit development
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26276.1.S1_at--800--2371Chr04:18870633..18870657 (25 bp)
AAACCGGCGACTGCTGAGACAGAGA
LOC_Os04g31804
OsAffx.26276.1.S1_at--434--6011Chr04:18870654..18870678 (25 bp)
GAGAGCAACTCCACTGAGATGCCCT
LOC_Os04g31804
OsAffx.26276.1.S1_at--144--3871Chr04:18870667..18870691 (25 bp)
CTGAGATGCCCTCTGATCATGAGAA
LOC_Os04g31804
OsAffx.26276.1.S1_at--737--9651Chr04:18870981..18871005 (25 bp)
TCAGCTGCAGTAGACGTGGACAAAA
LOC_Os04g31804
OsAffx.26276.1.S1_at--326--2411Chr04:18871003..18871027 (25 bp)
AAACACCATTTGTTGCAGCACAGCA
LOC_Os04g31804
OsAffx.26276.1.S1_at--850--5051Chr04:18871017..18871041 (25 bp)
GCAGCACAGCAATCCGAGCCCATAA
LOC_Os04g31804
OsAffx.26276.1.S1_at--914--5851Chr04:18871032..18871056 (25 bp)
GAGCCCATAACACAGCGTAGTAGTA
LOC_Os04g31804
OsAffx.26276.1.S1_at--281--1971Chr04:18871092..18871116 (25 bp)
ACTGTTGCTGGGAAGTTACTGTGCT
LOC_Os04g31804
OsAffx.26276.1.S1_at--180--10331Chr04:18871123..18871147 (25 bp)
TTTACTACTGTAGCGGTTCATGCCG
LOC_Os04g31804
OsAffx.26276.1.S1_at--807--7471Chr04:18871159..18871183 (25 bp)
GTGTGTCCGTACGTATCCGTATATA
LOC_Os04g31804
OsAffx.26276.1.S1_at--804--351Chr04:18871189..18871213 (25 bp)
ATAAGGCTGGCTGTGCCTGCAAATT
LOC_Os04g31804
Target Sequence 
AAACCGGCGACTGCTGAGACAGAGAGCAACTCCACTGAGATGCCCTCTGATCATGAGAAGAAACAGGTAGCAGGAGGAAG
CCAGCAGAGCGCCGAGGAGGAGGAGGAGGAGATGGAGGTGGTGCTCAGGCACCGCCTGAGCCTGGGCACCGGCGACCGTG
ACGATGGTGGCGGTGGCGCGGCGGAGCAACGGCACCGGACGACGCCGCCGCCGGCGGTCGACCTCAACGTGCCGTGCCGG
GACGCGGGTCAGCTGCAGTAGACGTGGACAAAACACCATTTGTTGCAGCACAGCAATCCGAGCCCATAACACAGCGTAGT
AGTAACAGTTTACAGCCGTAAACAATGTTTCGAAGTTATACTGTTGCTGGGAAGTTACTGTGCTAATAATTTTACTACTG
TAGCGGTTCATGCCGAGGGACGCTGTGTGTGTCCGTACGTATCCGTATATATATTAATAAGGCTGGCTGTGCCTGCAAAT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis