Browse Element(s) Details


Os.11546.1.S1_at

Description gb:AK121950.1
DB_XREF= gi:37991573
TID=Os.11546.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107J23, full insert sequence.
FL= gb:AK121950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3552011/11Peroxidase 52 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35490OsAffx.27950.1.S1_at10/116+20687531..20690748Peroxidase 52 precursor, putative
LOC_Os06g35500NANA6+20698118..20698444hypothetical protein
LOC_Os06g35510NANA6+20701536..20702393transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35520Os.11546.1.S1_at11/116+20704373..20706000Peroxidase 52 precursor, putative, expressed
LOC_Os06g35524Os.54910.1.S1_at11/116+20711611..20713603expressed protein
LOC_Os06g35530Os.15.1.S1_at11/116+20716775..20723726Shaggy-related protein kinase eta, putative, expressed
LOC_Os06g35540Os.4772.1.S1_at11/116+20726251..20730771Aspartate aminotransferase, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11546.1.S1_at--425--2031Chr06:20704840..20704864 (25 bp)
ACTACCAGAACCTCGTGTCGCAGCG
LOC_Os06g35520
Os.11546.1.S1_at--981--951Chr06:20704771..20704795 (25 bp)
AGGACGGCCTCGTCAGGCAGTACAG
LOC_Os06g35520
Os.11546.1.S1_at--73--2911Chr06:20704626..20704650 (25 bp)
AAGGATGATAAACCCCAATTCCCAT
LOC_Os06g35520
Os.11546.1.S1_at--892--3152Chr08:22235754..22235773 (20 bp)
AATTCCCATCGCATTGCATTTGCAG
NONE
Os.11546.1.S1_at--848--4951Chr06:20704595..20704619 (25 bp)
GCATTTGCAGGTGATCATTTCCGAT
LOC_Os06g35520
Os.11546.1.S1_at--499--6431Chr06:20704583..20704607 (25 bp)
GATCATTTCCGATGATCACCGTCTT
LOC_Os06g35520
Os.11546.1.S1_at--836--4251Chr06:20704549..20704573 (25 bp)
CCTGGGAACCAATGCGCCGGTGAGA
LOC_Os06g35520
Os.11546.1.S1_at--29--3031Chr06:20704539..20704563 (25 bp)
AATGCGCCGGTGAGATATCAAAACA
LOC_Os06g35520
Os.11546.1.S1_at--13--2991Chr06:20704457..20704481 (25 bp)
AATGTGCGACGCTTATATATGATGA
LOC_Os06g35520
Os.11546.1.S1_at--897--7831Chr06:20704422..20704446 (25 bp)
GGTAAATTATCGCAACCACGACAAT
LOC_Os06g35520
Os.11546.1.S1_at--766--4991Chr06:20704381..20704405 (25 bp)
GCATGATAATACAATCCTTGCTGTT
LOC_Os06g35520
Target Sequence 
ACTACCAGAACCTCGTGTCGCAGCGCGGCCTGCTCCACTCCGACCAGGAGCTCTTCAATGGCGGCTCGCAGGACGGCCTC
GTCAGGCAGTACAGCACCAACCCCTCCCAGTTCTCCTNCCGACTTCGTCTCCGCCATGGTCAAGATGGGCAACCTGCTGC
CGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAACTAATTAAGGATGATAAACCCCAATTCCCAT
CGCATTGCATTTGCAGGTGATCATTTCCGATGATCACCGTCTTCGCCGACGCCCTGGGAACCAATGCGCCGGTGAGATAT
CAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTACCACAAAGTGTAATAATGTGCGACGCTTAT
ATATGATGATATATACCATGGTAAATTATCGCAACCACGACAATGTATTTTTTTTATGATGCATGATAATACAATCCTTG
CTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis