Browse Element(s) Details


Os.11573.5.A1_x_at

Description gb:CB620769
DB_XREF= gi:29615757
DB_XREF=OSIIEa06D03.r
CLONE=OSIIEa06D03
TID=Os.11573.5
CNT=70
FEA=EST
TIER=Stack
STK=46
UG=Os.11573 (NCBI UniGene Cluster)
UG_TITLE=OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4797011/11Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47940NANA11+28355908..28359106hypothetical protein
LOC_Os11g47944NANA11+28360913..28361757Thaumatin family protein
LOC_Os11g47950OsAffx.7446.1.S1_at10/1111+28363415..28365589Cyclin, N-terminal domain containing protein
LOC_Os11g47960OsAffx.7447.1.S1_at11/1111+28374523..28374975hypothetical protein
LOC_Os11g47970Os.11573.7.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A2_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A1_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.5.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47980OsAffx.19434.1.S1_at11/1111+28380025..28381904expressed protein
LOC_Os11g47980Os.22640.1.A1_at1/1111+28380025..28381904expressed protein
LOC_Os11g47990OsAffx.27915.1.S1_at4/1111+28382689..28382952hypothetical protein
LOC_Os11g48000OsAffx.19436.1.S1_at11/1111+28389298..28390942Zinc finger, C2H2 type family protein, expressed
LOC_Os11g48010OsAffx.19437.1.S1_at11/1111+28395006..28395278hypothetical protein
LOC_Os11g48020Os.9207.1.S1_at11/1111+28395918..28399184Sterol desaturase family protein, expressed
LOC_Os11g48030Os.51861.1.S1_at11/1111+28399907..28402478Skp1 family, tetramerisation domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009507cellular_componentchloroplast
GO:0016887molecular_functionATPase activity
GO:0030234molecular_functionenzyme regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11573.5.A1_x_at--1052--2171Chr11:28376493..28376517 (25 bp)
ACACGGGTGTGGAGAACATTGGCAA
LOC_Os11g47970
Os.11573.5.A1_x_at--597--2511Chr11:28376479..28376503 (25 bp)
AACATTGGCAAGAGGCTGGTGAACT
LOC_Os11g47970
Os.11573.5.A1_x_at--1095--8031Chr11:28376438..28376462 (25 bp)
GGAGTTCGAGCAGCCCAAGATGACG
LOC_Os11g47970
Os.11573.5.A1_x_at--695--6311Chr11:28376420..28376444 (25 bp)
GATGACGATCGAAAAGCTCATGGAG
LOC_Os11g47970
Os.11573.5.A1_x_at--435--4831Chr11:28376405..28376429 (25 bp)
GCTCATGGAGTACGGATACATGCTT
LOC_Os11g47970
Os.11573.5.A1_x_at--958--7331Chr11:28376353..28376377 (25 bp)
GTGCAGCTGGCTGAGCAGTACTTGA
LOC_Os11g47970
Os.11573.5.A1_x_at--587--7371Chr11:28376313..28376337 (25 bp)
GTGACGCTAACTCCGACGCCATGAA
LOC_Os11g47970
Os.11573.5.A1_x_at--1025--511Chr11:28375878..28375902 (25 bp)
ATCGATGCATCGTAGGCGGCCTGCA
LOC_Os11g47970
Os.11573.5.A1_x_at--941--8251Chr11:28375144..28375168 (25 bp)
GGCAGCTGCCTTTACACCTTTTAAG
LOC_Os11g47970
Os.11573.5.A1_x_at--340--4411Chr11:28375137..28375161 (25 bp)
GCCTTTACACCTTTTAAGCAGGCCG
LOC_Os11g47970
Os.11573.5.A1_x_at--808--5792Chr09:4594611..4594631 (21 bp)
GACGCTTGCTATTAATTATTTCTCC
NONE
Target Sequence 
ACACGGGTGTGGAGAACATTGGCAAGAGGCTGGTGAACTCGAGGGAGGGNNCCCNNCCGGAGTTCGAGCAGCCCAAGATG
ACGATCGAAAAGCTCATGGAGTACGGATACATGCTTGTGAAGGAGCAGGAGAACGTCAAGCGTGTGCAGCTGGCTGAGCA
GTACTTGAGCGAGGCTGCTNTTGGTGACGCTAACTCCGACGCCATGAAGACTGGTTCCTTNTACGGTTNTGCGCCATCCA
GCTGAATAAAAGATCNTCTAGCTATTCGCATCCCATCGATGCATCGTAGGCGGCCTGCATAGGAGGAGGAGGGCAAGGAG
CANCAGCAAGNNNCAGGTAACCTGCCTGTGCCGGAAGGTTGCACCGACCCTGTTGCCAAGAACTTCGACCCAACGGCGAG
GAGCGACGACGGCAGCTGCCTTTACACCTTTTAAGCAGGCCGGCTTGACGCTTGCTATTAATTATTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11573.5.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis