Browse Element(s) Details


Os.11612.1.S1_at

Description gb:AK106299.1
DB_XREF= gi:32991508
TID=Os.11612.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-C03, full insert sequence.
FL= gb:AK106299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3888010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38860OsAffx.32087.1.S1_at11/1112+23851864..23855278Protein kinase domain containing protein, expressed
LOC_Os12g38870Os.16324.1.S1_at11/1112+23859127..23864684expressed protein
LOC_Os12g38880Os.11612.1.S1_at10/1112+23878675..23881227pentatricopeptide, putative, expressed
LOC_Os12g38890NANA12+23881418..23883176transposon protein, putative, unclassified
LOC_Os12g38900Os.23421.1.S1_at11/1112+23885360..23889818Chorismate mutase, chloroplast precursor, putative, expressed
LOC_Os12g38910Os.53867.1.S1_s_at11/1112+23892149..23895285expressed protein
LOC_Os12g38910Os.53867.1.S1_at11/1112+23892149..23895285expressed protein
LOC_Os12g38920Os.26843.1.S1_at11/1112+23897862..23902154Heparanase-like protein 2 precursor, putative, expressed
LOC_Os12g38930Os.8792.1.S1_at11/1112+23902336..23907840Glycosyl transferase family 8 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11612.1.S1_at--834--6811Chr12:23879248..23879272 (25 bp)
GTTTATTAGGGCAATGCATGCTTAT
LOC_Os12g38880
Os.11612.1.S1_at--501--7611Chr12:23879240..23879264 (25 bp)
GGGCAATGCATGCTTATAGGCTATT
LOC_Os12g38880
Os.11612.1.S1_at--693--271Chr12:23879225..23879249 (25 bp)
ATAGGCTATTGCAAATTTGGGAACC
LOC_Os12g38880
Os.11612.1.S1_at--711--3231Chr12:23879127..23879151 (25 bp)
CAAGAAGGTGGTAGGACATGGTACA
LOC_Os12g38880
Os.11612.1.S1_at--773--3651Chr12:23879098..23879122 (25 bp)
CTTCTTTGATTGAGTGAACAGCCTT
LOC_Os12g38880
Os.11612.1.S1_at--271--10271Chr12:23879094..23879118 (25 bp)
TTTGATTGAGTGAACAGCCTTGGAT
LOC_Os12g38880
Os.11612.1.S1_at--782--10752Chr08:27878699..27878719 (21 bp)
TTGAAAGCTTGAGGCATTCATCAGC
NONE
Os.11612.1.S1_at--447--3591Chr12:23879052..23879076 (25 bp)
CATTCATCAGCTTCTGCGCATCTGC
LOC_Os12g38880
Os.11612.1.S1_at--622--10591Chr12:23879041..23879065 (25 bp)
TTCTGCGCATCTGCCATCAGGTTTG
LOC_Os12g38880
Os.11612.1.S1_at--423--2251Chr12:23878685..23878709 (25 bp)
AAATTTCAATGCAGATATCTTCATG
LOC_Os12g38880
Os.11612.1.S1_at--1067--5031Chr12:23878675..23878699 (25 bp)
GCAGATATCTTCATGCATTGAGAAC
NONE
Target Sequence 
GTTTATTAGGGCAATGCATGCTTATAGGCTATTGCAAATTTGGGAACCTCTGCCTGGTCATTAACCTTGCAGATCATGTG
ATCTGAAGAAAGGAAGCACCATTCCTTGTACTGCCTGCAATCAAGAAGGTGGTAGGACATGGTACAGAAGCTTCTTTGAT
TGAGTGAACAGCCTTGGATGTGTTGAAAGCTTGAGGCATTCATCAGCTTCTGCGCATCTGCCATCAGGTTTGCTCTGTTA
ATGACTGTTACCATGACGACAGATGATGATGGGGGTGACTGACAAAACACTGACAATGGTCGGATAGTTCATGGTTAGGG
CCTTCACTTCATCTGGTTAGACAAAACCGAAACAAAGGTTTATGGTTAGGGCCTTCTGAAAAAGCAGAAGACAGGAACTC
AAGATTCAACAGAGCAGCATTTTTCTCTTTCCACTGCAACAGTACAATGTTAGCGCATAAGAATAGTATATTTTGGAGGT
TTTACAGTTCTTGACTTCATATTTTACATGTATCATCCTTTTCTAAACGAANGTATGAATGAAGAAGTATATATTGTTCT
ATCAAATTTCAATGCAGATATCTTCATGCATTGAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis