Browse Element(s) Details


Os.11618.1.S1_at

Description gb:AK111677.1
DB_XREF= gi:37988340
TID=Os.11618.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160M10, full insert sequence.
FL= gb:AK103155.1 gb:AK111677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0723011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07200OsAffx.29532.1.S1_x_at3/1111+3609848..3610366retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g07210Os.27053.2.S1_s_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07210Os.27053.3.A1_s_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07210Os.27053.3.A1_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07220NANA11+3616881..3619029hypothetical protein
LOC_Os11g07230Os.11618.1.S1_at11/1111+3629205..3634547Leucine Rich Repeat family protein, expressed
LOC_Os11g07230Os.11618.2.S1_at8/1111+3629205..3634547Leucine Rich Repeat family protein, expressed
LOC_Os11g07240OsAffx.30858.1.S1_at11/1111+3636770..3639905Leucine Rich Repeat family protein
LOC_Os11g07250Os.27854.1.S1_at1/1111+3645478..3648693Leucine Rich Repeat family protein, expressed
LOC_Os11g07260OsAffx.18719.2.S1_at11/1111+3653727..3657157Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11618.1.S1_at--1022--671Chr11:3633858..3633882 (25 bp)
ATGACATCATCTTTTGGTTGCTCAA
LOC_Os11g07230
Os.11618.1.S1_at--346--3691Chr11:3634077..3634101 (25 bp)
CTTTGGTGTCGTTCTCCTTGAGATA
LOC_Os11g07230
Os.11618.1.S1_at--748--10271Chr11:3634159..3634183 (25 bp)
TTTGCAGAGTTGAACCTCCCTGATA
LOC_Os11g07230
Os.11618.1.S1_at--812--8811Chr11:3634197..3634221 (25 bp)
TGTTGATCCCCAGCTGCAGCAAGAT
LOC_Os11g07230
Os.11618.1.S1_at--174--5991Chr11:3634225..3634249 (25 bp)
GAGACTTGCCAAGAAACCCCGATGG
LOC_Os11g07230
Os.11618.1.S1_at--35--5551Chr11:3634260..3634284 (25 bp)
GAAACTCACAGATTGCCTGCTTTCA
LOC_Os11g07230
Os.11618.1.S1_at--1033--4451Chr11:3634274..3634298 (25 bp)
GCCTGCTTTCAGTCCTAAGTATTGG
LOC_Os11g07230
Os.11618.1.S1_at--199--3671Chr11:3634300..3634324 (25 bp)
CTTTCTTGTACTAAATCATCCCCGA
LOC_Os11g07230
Os.11618.1.S1_at--421--551Chr11:3634317..3634341 (25 bp)
ATCCCCGAGTGAACGCAACAGCATG
LOC_Os11g07230
Os.11618.1.S1_at--663--2391Chr11:3634392..3634416 (25 bp)
AAACTAACACTTTTCCTACTATCAG
LOC_Os11g07230
Os.11618.1.S1_at--1112--5111Chr11:3634510..3634534 (25 bp)
GCAAAACCTCTCTTTTACAGTGTTA
LOC_Os11g07230
Target Sequence 
ATGACATCATCTTTTGGTTGCTCAACTTCTTCAGTTGCAATCAGTGGAACCATAGGATATGTTGCTCCAGAATGCGCAGA
GAGTGGTCAAGTTTCAACAGCCACAGATGTTTACAGCTTTGGTGTCGTTCTCCTTGAGATATTCATCCGAAGGAGGCCAA
CAGATGACATGTTTAATGATGGACTGAGCATCGCAAAATTTGCAGAGTTGAACCTCCCTGATANGGTGTTGCAGATTGTT
GATCCCCAGCTGCAGCAAGATCTGGAGACTTGCCAAGAAACCCCGATGGCCATAAAAAAGAAACTCACAGATTGCCTGCT
TTCAGTCCTAAGTATTGGTCTTTCTTGTACTAAATCATCCCCGAGTGAACGCAACAGCATGAAGGAGGTGGCTATAGAGT
TGCATAGAATTTGGGATGCATATCTCAGAGAAAACTAACACTTTTCCTACTATCAGTTATCGAATTTTTTTTGTGTTAAT
CAGGAGGTATATACCTCTGATACTATGATGTATTTATANATANACCTCTCAATNCCTTTNTAGANCCACGCAAAACCTCT
CTTTTACAGTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis