Browse Element(s) Details


Os.11618.2.S1_at

Description gb:AK111017.1
DB_XREF= gi:32996226
TID=Os.11618.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G06, full insert sequence.
FL= gb:AK111017.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g072308/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07200OsAffx.29532.1.S1_x_at3/1111+3609848..3610366retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g07210Os.27053.2.S1_s_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07210Os.27053.3.A1_s_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07210Os.27053.3.A1_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07220NANA11+3616881..3619029hypothetical protein
LOC_Os11g07230Os.11618.1.S1_at11/1111+3629205..3634547Leucine Rich Repeat family protein, expressed
LOC_Os11g07230Os.11618.2.S1_at8/1111+3629205..3634547Leucine Rich Repeat family protein, expressed
LOC_Os11g07240OsAffx.30858.1.S1_at11/1111+3636770..3639905Leucine Rich Repeat family protein
LOC_Os11g07250Os.27854.1.S1_at1/1111+3645478..3648693Leucine Rich Repeat family protein, expressed
LOC_Os11g07260OsAffx.18719.2.S1_at11/1111+3653727..3657157Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11618.2.S1_at--725--2071Chr11:3630123..3630147 (25 bp)
ACATCACTATCACAGGTAATTGAAC
LOC_Os11g07230
Os.11618.2.S1_at--335--7831NONE
GGTAATTGAACCAATCTGTGTAGCT
NONE
Os.11618.2.S1_at--605--2651NONE
AACCAATCTGTGTAGCTTGTAGCCT
NONE
Os.11618.2.S1_at--764--3051NONE
AATCTGTGTAGCTTGTAGCCTCTCT
NONE
Os.11618.2.S1_at--196--6971Chr11:3630156..3630180 (25 bp)
GTAGCTTGTAGCCTCTCTTATGGAG
LOC_Os11g07230
Os.11618.2.S1_at--482--4451Chr11:3630166..3630190 (25 bp)
GCCTCTCTTATGGAGGTCGGACCAA
LOC_Os11g07230
Os.11618.2.S1_at--845--7991Chr11:3630177..3630201 (25 bp)
GGAGGTCGGACCAAGTCACTGGTTA
LOC_Os11g07230
Os.11618.2.S1_at--1099--7791Chr11:3630180..3630204 (25 bp)
GGTCGGACCAAGTCACTGGTTAATT
LOC_Os11g07230
Os.11618.2.S1_at--627--7091Chr11:3630191..3630215 (25 bp)
GTCACTGGTTAATTGAGCCTATCTT
LOC_Os11g07230
Os.11618.2.S1_at--1128--7871Chr11:3630197..3630221 (25 bp)
GGTTAATTGAGCCTATCTTTGACTG
LOC_Os11g07230
Os.11618.2.S1_at--887--51Chr11:3630202..3630226 (25 bp)
ATTGAGCCTATCTTTGACTGCTGAT
LOC_Os11g07230
Target Sequence 
ACATCACTATCACAGGTAATTGAACCAATCTGTGTAGCTTGTAGCCTCTCTTATGGAGGTCGGACCAAGTCACTGGTTAA
TTGAGCCTATCTTTGACTGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11618.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis