Browse Element(s) Details


Os.11631.1.S1_at

Description gb:AK120783.1
DB_XREF= gi:37990406
TID=Os.11631.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010D09, full insert sequence.
FL= gb:AK120783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1576011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15750OsAffx.15443.1.S1_at11/116+8934093..8938019NB-ARC domain containing protein
LOC_Os06g15760Os.11631.1.S1_at11/116+8954692..8958656Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g15779Os.50340.1.S1_at11/116+8959008..8963690expressed protein
LOC_Os06g15779Os.50340.2.S1_x_at10/116+8959008..8963690expressed protein
LOC_Os06g15800OsAffx.30774.2.S1_at11/116+8968632..8970165hypothetical protein
LOC_Os06g15800OsAffx.30774.1.S1_s_at11/116+8968632..8970165hypothetical protein
LOC_Os06g15810Os.50766.1.S1_at11/116+8973515..8975734expressed protein
LOC_Os06g15820Os.50610.1.S1_at11/116+8976348..8980634NHL repeat-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11631.1.S1_at--173--9611Chr06:8957819..8957843 (25 bp)
TCATCTTGCCAAGGACATTCGTTAT
LOC_Os06g15760
Os.11631.1.S1_at--364--6191Chr06:8957851..8957872 (22 bp)
GAGGACTACTTAATCATCAGTGATA
LOC_Os06g15760
Os.11631.1.S1_at--297--3191Chr06:8958029..8958053 (25 bp)
CAATATCTGCCTAGGAGTGTTGGAT
LOC_Os06g15760
Os.11631.1.S1_at--265--8171Chr06:8958054..8958078 (25 bp)
GGAACAGAGATTGGTCATGACTCAG
LOC_Os06g15760
Os.11631.1.S1_at--1071--7051Chr06:8958084..8958203 (25 bp)
GTAATCGGAGATGTTTCCCTTCGAG
LOC_Os06g15760
Os.11631.1.S1_at--137--8691Chr06:8958260..8958284 (25 bp)
TGTGCCAAGCCACAGAAACAAAGTG
LOC_Os06g15760
Os.11631.1.S1_at--975--31Chr06:8958345..8958369 (25 bp)
ATTGAAATTTACCACCAGCTCGACT
LOC_Os06g15760
Os.11631.1.S1_at--302--1571Chr06:8958361..8958385 (25 bp)
AGCTCGACTGACCATGCTTTACTTT
LOC_Os06g15760
Os.11631.1.S1_at--1024--7331Chr06:8958391..8958415 (25 bp)
GTGCAAATTCTACGTTCAAAGCTGC
LOC_Os06g15760
Os.11631.1.S1_at--447--5231Chr06:8958560..8958584 (25 bp)
GAATATATCTCAACCACCTGTAAAG
LOC_Os06g15760
Os.11631.1.S1_at--643--6071Chr06:8958584..8958608 (25 bp)
GAGTATATCTCATCCACTTGTAAGA
LOC_Os06g15760
Target Sequence 
TCATCTTGCCAAGGACATTCGTTATCCCCCCTGAGGACTACTTAATCATCAGTGATAAGAACAATATCTGCCTAGGAGTG
TTGGATGGAACAGAGATTGGTCATGACTCAGCGATAGTAATCGGAGATGTTTCCCTTCGAGGAAAGCTAGTTGTATATAA
CAATGATGAGAAGCAGATAGGATGGGTTCAGTCAGACTGTGCCAAGCCACAGAAACAAAGTGGATTTCCTTTCCTCTTTA
AAAGAGTGCTGCAAAATCAACTTTTGTAAATGTCACATAGAAATTGAAATTTACCACCAGCTCGACTGACCATGCTTTAC
TTTTGGACGTGCAAATTCTACGTTCAAAGCTGCCATAATCAATATCAGTGAAAGTAATTAAACAGGACATAGGGTAAAAA
GAAGATGTAAGTAGAGATAGCCAGTAAGTATGTTGTACTTAGTAATTTGTCTCTTCTGTATACACAAAGAAGCAGAATTA
TGTATATGTATTTTGTAGAATATATCTCAACCACCTGTAAAGAGTATATCTCATCCACTTGTAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis