Browse Element(s) Details


Os.11633.3.S1_at

Description gb:CB657736
DB_XREF= gi:29661461
DB_XREF=OSJNEc13E16.r
CLONE=OSJNEc13E16
TID=Os.11633.3
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.11633 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566215.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1042011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10390Os.18616.1.S1_at11/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10390OsAffx.12779.1.S1_at1/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10400OsAffx.5280.1.S1_at11/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10400Os.14644.2.S1_x_at5/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10410OsAffx.5281.1.S1_at11/117+5592210..5593010AP2 domain containing protein
LOC_Os07g10420Os.11633.3.S1_at11/117+5597010..5599089expressed protein
LOC_Os07g10420OsAffx.28387.1.S1_s_at11/117+5597010..5599089expressed protein
LOC_Os07g10430OsAffx.5282.1.S1_at11/117+5607013..5607330hypothetical protein
LOC_Os07g10440OsAffx.5283.1.S1_at5/117+5610538..5610913expressed protein
LOC_Os07g10460Os.15242.1.S1_at11/117+5612114..5622021acid phosphatase SurE family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11633.3.S1_at--987--7572Chr07:5598431..5598455 (25 bp)
GGGCTGATACAAATACAGAATCTAA
LOC_Os07g10420
Os.11633.3.S1_at--1016--9851Chr07:5598444..5598468 (25 bp)
TACAGAATCTAAAACCATCATATCG
LOC_Os07g10420
Os.11633.3.S1_at--439--3571Chr07:5598462..5598486 (25 bp)
CATATCGTTTACGTTCTAGTAAAAG
LOC_Os07g10420
Os.11633.3.S1_at--365--7891Chr07:5598493..5598517 (25 bp)
GGTTACTGACACCATGTTTTTTCAT
LOC_Os07g10420
Os.11633.3.S1_at--989--5632Chr07:5598500..5598524 (25 bp)
GACACCATGTTTTTTCATTCAATGT
LOC_Os07g10420
Os.11633.3.S1_at--885--6811Chr07:5598508..5598532 (25 bp)
GTTTTTTCATTCAATGTACAACTGA
LOC_Os07g10420
Os.11633.3.S1_at--1021--3131Chr07:5598537..5598561 (25 bp)
AATTAGCTACTCAATCTTATCCATG
LOC_Os07g10420
Os.11633.3.S1_at--147--9911Chr07:5598544..5598568 (25 bp)
TACTCAATCTTATCCATGAGAACTT
LOC_Os07g10420
Os.11633.3.S1_at--318--8911Chr07:5598560..5598584 (25 bp)
TGAGAACTTTGCCTGAATCATGGTT
LOC_Os07g10420
Os.11633.3.S1_at--426--2531Chr07:5598564..5598588 (25 bp)
AACTTTGCCTGAATCATGGTTTGAT
LOC_Os07g10420
Os.11633.3.S1_at--246--10271Chr07:5598583..5598607 (25 bp)
TTTGATTTGTTGATCTGCAGAGAAT
LOC_Os07g10420
Target Sequence 
GGGCTGATACAAATACAGAATCTAAAACCATCATATCGTTTACGTTCTAGTAAAAGAAAATTGGTTACTGACACCATGTT
TTTTCATTCAATGTACAACTGAACAAAATTAGCTACTCAATCTTATCCATGAGAACTTTGCCTGAATCATGGTTTGATTT
GTTGATCTGCAGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11633.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis