Browse Element(s) Details


Os.11643.1.S1_at

Description gb:AK072079.1
DB_XREF= gi:32982102
TID=Os.11643.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11643 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116L12, full insert sequence.
FL= gb:AK072079.1 gb:AK120207.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2975011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29690OsAffx.13112.1.S1_at11/113+16879732..16880450hypothetical protein
LOC_Os03g29710OsAffx.16205.1.S1_at2/113+16887490..16890376hypothetical protein
LOC_Os03g29710OsAffx.25292.1.S1_at1/113+16887490..16890376hypothetical protein
LOC_Os03g29730Os.46091.1.S1_s_at11/113+16892625..16895830expressed protein
LOC_Os03g29740OsAffx.3365.1.S1_s_at11/113+16896148..16898314small nuclear ribonucleoprotein G, putative, expressed
LOC_Os03g29750Os.11643.1.S1_at11/113+16903540..16909712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g29760Os.10440.1.S1_a_at11/113+16920185..16925726CCAAT-box transcription factor complex WHAP3, putative, expressed
LOC_Os03g29770OsAffx.25285.1.S1_at11/113+16929907..16930680EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11643.1.S1_at--201--5731Chr03:16909174..16909198 (25 bp)
GACTGCAGCCGACAACGATGACCAT
LOC_Os03g29750
Os.11643.1.S1_at--510--4051Chr03:16909189..16909213 (25 bp)
CGATGACCATGGTGCAGAACCCACA
LOC_Os03g29750
Os.11643.1.S1_at--392--491Chr03:16909257..16909281 (25 bp)
ATCGGCATTGATATGGCAGCCATGG
LOC_Os03g29750
Os.11643.1.S1_at--96--8311Chr03:16909337..16909361 (25 bp)
GGCTCCTCCCAGTTTTTTATGATGA
LOC_Os03g29750
Os.11643.1.S1_at--735--851Chr03:16909367..16909391 (25 bp)
ATGGCAGTGCTCTCATGAGACGACA
LOC_Os03g29750
Os.11643.1.S1_at--294--2871Chr03:16909391..16909415 (25 bp)
AAGTGAGCTGGTTTCGTATCGACAA
LOC_Os03g29750
Os.11643.1.S1_at--548--4551Chr03:16909538..16909562 (25 bp)
GCCCAAAGCGTGTCCTGCATTGGAA
LOC_Os03g29750
Os.11643.1.S1_at--981--8151Chr03:16909559..16909583 (25 bp)
GGAAACACCAATTTTGACTGCCAGT
LOC_Os03g29750
Os.11643.1.S1_at--60--5731Chr03:16909574..16909598 (25 bp)
GACTGCCAGTTTGCTATCTTATTTA
LOC_Os03g29750
Os.11643.1.S1_at--528--791Chr03:16909652..16909676 (25 bp)
ATGTGTGCTCCGAAATGCTTTATGA
LOC_Os03g29750
Os.11643.1.S1_at--313--3051Chr03:16909687..16909711 (25 bp)
AATCGCATGATAATTCCGCTGTTCC
LOC_Os03g29750
Target Sequence 
GACTGCAGCCGACAACGATGACCATGGTGCAGAACCCACAACCCATGGTGCATCAGCCAGCCNGTCCGCCGTTGGCTGGA
AATATCGGCATTGATATGGCAGCCATGGCTTCTGGAGCTCAGGTTGGAGCATTTCAGCAAAACCAACTCAGCCATCTCGG
CTGGGCTCCTCCCAGTTTTTTATGATGATTTGGATGGCAGTGCTCTCATGAGACGACAAGTGAGCTGGTTTCGTATCGAC
AAGAAAAAGAAAAGAAAAGAACTGATTGAAGAGCTATGCTCTAATGCAAGTAACTCATGATACTTGCCACCTTTTGTTTA
TGATGCAGGGAAAAACATGTTAGTATTCCAGTTCATCTTGCACCGCCCAAAGCGTGTCCTGCATTGGAAACACCAATTTT
GACTGCCAGTTTGCTATCTTATTTATTTCTGGTTTTATAGTATACATCAGTTCGATCTTAACTTTTCTGATCGATGAAAT
GTGTGCTCCGAAATGCTTTATGAGTTCAACTCAAATCGCATGATAATTCCGCTGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis