Browse Element(s) Details


Os.10440.1.S1_a_at

Description gb:AK062135.1
DB_XREF= gi:32972153
TID=Os.10440.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F05, full insert sequence.
FL= gb:AK062135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2976011/11CCAAT-box transcription factor complex WHAP3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29730Os.46091.1.S1_s_at11/113+16892625..16895830expressed protein
LOC_Os03g29740OsAffx.3365.1.S1_s_at11/113+16896148..16898314small nuclear ribonucleoprotein G, putative, expressed
LOC_Os03g29750Os.11643.1.S1_at11/113+16903540..16909712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g29760Os.10440.1.S1_a_at11/113+16920185..16925726CCAAT-box transcription factor complex WHAP3, putative, expressed
LOC_Os03g29770OsAffx.25285.1.S1_at11/113+16929907..16930680EF hand family protein, expressed
LOC_Os03g29790OsAffx.22947.1.S1_x_at11/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.3.S1_x_at5/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.2.S1_x_at3/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.5.S1_x_at1/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29810Os.34521.1.S1_at11/113+16949262..16952730Clp protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10440.1.S1_a_at--1093--4671Chr03:16925113..16925137 (25 bp)
GCGGTGCCGTTGTCCTTGGCAAGAA
LOC_Os03g29760
Os.10440.1.S1_a_at--897--2211Chr03:16925271..16925295 (25 bp)
ACAATGAACCAGAACCACCGTGTCC
LOC_Os03g29760
Os.10440.1.S1_a_at--776--4231Chr03:16925288..16925312 (25 bp)
CCGTGTCCCCGTCATGAGGTGAAAA
LOC_Os03g29760
Os.10440.1.S1_a_at--762--8971Chr03:16925307..16925331 (25 bp)
TGAAAACCTCGGGATCGCGGGACAC
LOC_Os03g29760
Os.10440.1.S1_a_at--428--7571Chr03:16925332..16925356 (25 bp)
GGGCGGTTCTGGTTTACCCTCACTG
LOC_Os03g29760
Os.10440.1.S1_a_at--401--5311Chr03:16925494..16925518 (25 bp)
GAACGAACTGTCGAGCAGATGGCTA
LOC_Os03g29760
Os.10440.1.S1_a_at--1072--3032Chr03:16925541..16925565 (25 bp)
AATCCTGAAGCTTTTGATGTACCTA
LOC_Os03g29760
Os.10440.1.S1_a_at--821--6271Chr03:16925556..16925580 (25 bp)
GATGTACCTAATTGCCTTTTGCTTA
LOC_Os03g29760
Os.10440.1.S1_a_at--925--4431Chr03:16925569..16925593 (25 bp)
GCCTTTTGCTTATACTCTTGGTGTA
LOC_Os03g29760
Os.10440.1.S1_a_at--866--7431Chr03:16925589..16925613 (25 bp)
GTGTATACCCATTACCAAGTTGCCT
LOC_Os03g29760
Os.10440.1.S1_a_at--204--4411Chr03:16925660..16925684 (25 bp)
GCCACATGTAATCAATCACCTGTTT
LOC_Os03g29760
Target Sequence 
GCGGTGCCGTTGTCCTTGGCAAGAACCTGTGCCCAGAGAACAGCACATCCTGCTCGCCATCGACACCGACAGGCTCCGAG
ATCTCCAGCATCTCATTTGGGGGCGGCATGCTGGCTCACCAAGAGCACATCAGCTTCGCATCCGCTGATCGCCACCCCAC
AATGAACCAGAACCACCGTGTCCCCGTCATGAGGTGAAAACCTCGGGATCGCGGGACACGGGCGGTTCTGGTTTACCCTC
ACTGGCGCACTCCGGTGTGCCCGTGGCAATTCATCCTTGGCTTATGAAGTATCTACCTGATAATAGTCTGCTGTCAGTTT
ATATGCAATGCAACCTCTGTCAGATAAACTCTTATAGTTTGTTTTATTGTAAGCTATGACTGAACGAACTGTCGAGCAGA
TGGCTAATTTGTATGTTGTGGGTACAGAAATCCTGAAGCTTTTGATGTACCTAATTGCCTTTTGCTTATACTCTTGGTGT
ATACCCATTACCAAGTTGCCTTAAAAACCCTCCNAATTATGTAATCAGTCANTGGTTTTATAGAACCTTGCCACATGTAA
TCAATCACCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10440.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis