Browse Element(s) Details


Os.34521.1.S1_at

Description gb:AK071057.1
DB_XREF= gi:32981080
TID=Os.34521.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078E16, full insert sequence.
FL= gb:AK058696.1 gb:AK071057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2981011/11Clp protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29760Os.10440.1.S1_a_at11/113+16920185..16925726CCAAT-box transcription factor complex WHAP3, putative, expressed
LOC_Os03g29770OsAffx.25285.1.S1_at11/113+16929907..16930680EF hand family protein, expressed
LOC_Os03g29790OsAffx.22947.1.S1_x_at11/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.3.S1_x_at5/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.2.S1_x_at3/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.5.S1_x_at1/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29810Os.34521.1.S1_at11/113+16949262..16952730Clp protease family protein, expressed
LOC_Os03g29830Os.28409.4.S1_s_at11/113+16954199..16957297expressed protein
LOC_Os03g29830OsAffx.25286.1.S1_at10/113+16954199..16957297expressed protein
LOC_Os03g29840OsAffx.25287.1.S1_at11/113+16960984..16961997hypothetical protein
LOC_Os03g29850Os.15732.1.S1_s_at11/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.17065.1.S1_at8/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.57162.1.S1_x_at1/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.57162.1.S1_at1/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29864OsAffx.25288.1.S1_s_at11/113+16969392..16977744retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34521.1.S1_at--594--8991Chr03:16952042..16952066 (25 bp)
TGCTGCTTTTACTGGGCAAACCTTG
LOC_Os03g29810
Os.34521.1.S1_at--308--8131Chr03:16952228..16952252 (25 bp)
GGACTAGTTGATGCCCTGCTGGAAA
LOC_Os03g29810
Os.34521.1.S1_at--214--6211Chr03:16952376..16952400 (25 bp)
GAGGCTGGATCTGCGAGACTTGAAT
LOC_Os03g29810
Os.34521.1.S1_at--340--5991Chr03:16952390..16952414 (25 bp)
GAGACTTGAATGCATCGCCATCGCT
LOC_Os03g29810
Os.34521.1.S1_at--60--10291Chr03:16952451..16952475 (25 bp)
TTTGCTCTTCTTTTTTGGATCTGGT
LOC_Os03g29810
Os.34521.1.S1_at--395--7971Chr03:16952467..16952491 (25 bp)
GGATCTGGTTTTACATGCCGCCAGC
LOC_Os03g29810
Os.34521.1.S1_at--749--7811Chr03:16952496..16952520 (25 bp)
GGTCTCAATGCATTGGTCCTGCTAA
LOC_Os03g29810
Os.34521.1.S1_at--355--5851Chr03:16952532..16952556 (25 bp)
GACCAGATGATCCTTTAGACAGCAA
LOC_Os03g29810
Os.34521.1.S1_at--720--10211Chr03:16952566..16952590 (25 bp)
TATTACTCCGTAGATTTTCCCATGA
LOC_Os03g29810
Os.34521.1.S1_at--586--171Chr03:16952579..16952603 (25 bp)
ATTTTCCCATGAGCTGATTCCAGAC
LOC_Os03g29810
Os.34521.1.S1_at--188--6591Chr03:16952594..16952618 (25 bp)
GATTCCAGACTGTGTGCAACTTTTG
LOC_Os03g29810
Target Sequence 
TGCTGCTTTTACTGGGCAAACCTTGGATATGGTACAACAGTGGACAGAGAGGGATCGTTTCATGTCTNCATCTGAAGCCA
TGGACTTTGGACTAGTTGATGCCCTGCTGGAAACAAGATACTAACAAACAAACACTTAGGCACAGTTTGATTAGCAGAGG
CTGGTACAAGGATTGTGAAACTGGAGCTGAAGTTGAGATTTTCGCCGTCCTTCTAGTTCAAGGACTCCAATGACAGGAGG
CTGGATCTGCGAGACTTGAATGCATCGCCATCGCTCCTATGAGCAAAACATCTCTGCGTTGAGTGTGATTTTTTGCTCTT
CTTTTTTGGATCTGGTTTTACATGCCGCCAGCCTATGGTCTCAATGCATTGGTCCTGCTAATGTTTAGTGTAGACCAGAT
GATCCTTTAGACAGCAAAACATCAGTTATTACTCCGTAGATTTTCCCATGAGCTGATTCCAGACTGTGTGCAACTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis