Browse Element(s) Details

Os.17065.1.S1_at

Description

gb:AY302059.1
DB_XREF= gi:31872115
GEN=ZIP2
TID=Os.17065.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17065 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) zinc transporter (ZIP2) mRNA, complete cds.
PROD=zinc transporter
FL= gb:AK121551.1 gb:AY302059.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g29850	8/11	zinc transporter, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g29790	OsAffx.22947.1.S1_x_at	11/11	3	+	16937075..16943438	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790	OsAffx.22947.3.S1_x_at	5/11	3	+	16937075..16943438	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790	OsAffx.22947.2.S1_x_at	3/11	3	+	16937075..16943438	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790	OsAffx.22947.5.S1_x_at	1/11	3	+	16937075..16943438	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29810	Os.34521.1.S1_at	11/11	3	+	16949262..16952730	Clp protease family protein, expressed
LOC_Os03g29830	Os.28409.4.S1_s_at	11/11	3	+	16954199..16957297	expressed protein
LOC_Os03g29830	OsAffx.25286.1.S1_at	10/11	3	+	16954199..16957297	expressed protein
LOC_Os03g29840	OsAffx.25287.1.S1_at	11/11	3	+	16960984..16961997	hypothetical protein
LOC_Os03g29850	Os.15732.1.S1_s_at	11/11	3	+	16963021..16966257	zinc transporter, putative, expressed
LOC_Os03g29850	Os.17065.1.S1_at	8/11	3	+	16963021..16966257	zinc transporter, putative, expressed
LOC_Os03g29850	Os.57162.1.S1_x_at	1/11	3	+	16963021..16966257	zinc transporter, putative, expressed
LOC_Os03g29850	Os.57162.1.S1_at	1/11	3	+	16963021..16966257	zinc transporter, putative, expressed
LOC_Os03g29864	OsAffx.25288.1.S1_s_at	11/11	3	+	16969392..16977744	retrotransposon protein, putative, unclassified, expressed
LOC_Os03g29880	Os.14919.1.S1_at	4/11	3	+	16979721..16984701	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29900	OsAffx.29313.1.S1_at	1/11	3	+	16986909..16990220	transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006812	biological_process	cation transport
GO:0006829	biological_process	zinc ion transport
GO:0005375	molecular_function	copper ion transporter activity
GO:0005385	molecular_function	zinc ion transporter activity
GO:0008324	molecular_function	cation transporter activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups
GO:0046873	molecular_function	metal ion transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.17065.1.S1_at--998--199	1	Chr03:16964780..16964804 (25 bp)	ACTCCGTCTTCGAGGGCATCGCCAT	LOC_Os03g29850
Os.17065.1.S1_at--911--53	1	NONE	ATCGCCATCGGAGTCGCCGAGACGA	NONE
Os.17065.1.S1_at--532--933	1	NONE	TCGCCATCGGAGTCGCCGAGACGAA	NONE
Os.17065.1.S1_at--731--423	1	NONE	CCGAGACGAAGGCTGACGCATGGAA	NONE
Os.17065.1.S1_at--329--139	1	Chr03:16963601..16963625 (25 bp)	AGACGAAGGCTGACGCATGGAAGGC	LOC_Os03g29850
Os.17065.1.S1_at--902--853	1	Chr03:16963572..16963596 (25 bp)	TGGACGATCAGCCTGCACAAGATCT	LOC_Os03g29850
Os.17065.1.S1_at--794--811	1	Chr03:16963571..16963595 (25 bp)	GGACGATCAGCCTGCACAAGATCTT	LOC_Os03g29850
Os.17065.1.S1_at--1010--187	1	Chr03:16963569..16963593 (25 bp)	ACGATCAGCCTGCACAAGATCTTCG	LOC_Os03g29850
Os.17065.1.S1_at--585--39	1	Chr03:16963566..16963590 (25 bp)	ATCAGCCTGCACAAGATCTTCGCGG	LOC_Os03g29850
Os.17065.1.S1_at--391--967	1	Chr03:16963565..16963589 (25 bp)	TCAGCCTGCACAAGATCTTCGCGGC	LOC_Os03g29850
Os.17065.1.S1_at--257--841	1	Chr03:16963499..16963523 (25 bp)	GGCCGTTCCTCTCCTGCTTCGGCTA	LOC_Os03g29850

Target Sequence

ACTCCGTCTTCGAGGGCATCGCCATCGGAGTCGCCGAGACGAAGGCTGACGCATGGAAGGCGCNTGTGGACGATCAGCCT
GCACAAGATCTTCGCGGCCATCGCCATGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCG
GCTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis