Browse Element(s) Details


Os.15732.1.S1_s_at

Description gb:AU032700
DB_XREF= gi:3768673
DB_XREF=AU032700
CLONE=S13705_6Z
TID=Os.15732.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15732 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2985011/11zinc transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29790OsAffx.22947.1.S1_x_at11/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.3.S1_x_at5/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.2.S1_x_at3/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.5.S1_x_at1/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29810Os.34521.1.S1_at11/113+16949262..16952730Clp protease family protein, expressed
LOC_Os03g29830Os.28409.4.S1_s_at11/113+16954199..16957297expressed protein
LOC_Os03g29830OsAffx.25286.1.S1_at10/113+16954199..16957297expressed protein
LOC_Os03g29840OsAffx.25287.1.S1_at11/113+16960984..16961997hypothetical protein
LOC_Os03g29850Os.15732.1.S1_s_at11/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.17065.1.S1_at8/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.57162.1.S1_x_at1/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.57162.1.S1_at1/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29864OsAffx.25288.1.S1_s_at11/113+16969392..16977744retrotransposon protein, putative, unclassified, expressed
LOC_Os03g29880Os.14919.1.S1_at4/113+16979721..16984701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29900OsAffx.29313.1.S1_at1/113+16986909..16990220transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006829biological_processzinc ion transport
GO:0005375molecular_functioncopper ion transporter activity
GO:0005385molecular_functionzinc ion transporter activity
GO:0008324molecular_functioncation transporter activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15732.1.S1_s_at--94--731Chr03:16963198..16963222 (25 bp)
ATGATTTCGGACGTTTGTTGGTTCT
LOC_Os03g29850
Os.15732.1.S1_s_at--161--6511Chr03:16963196..16963220 (25 bp)
GATTTCGGACGTTTGTTGGTTCTTG
LOC_Os03g29850
Os.15732.1.S1_s_at--1120--10771Chr03:16963184..16963208 (25 bp)
TTGTTGGTTCTTGCAGGAATGTGTG
LOC_Os03g29850
Os.15732.1.S1_s_at--1078--6731Chr03:16963178..16963202 (25 bp)
GTTCTTGCAGGAATGTGTGTGTGTA
LOC_Os03g29850
Os.15732.1.S1_s_at--117--2991Chr03:16963167..16963191 (25 bp)
AATGTGTGTGTGTAGTAAGTTCGTC
LOC_Os03g29850
Os.15732.1.S1_s_at--720--7471Chr03:16963162..16963186 (25 bp)
GTGTGTGTAGTAAGTTCGTCGTGAA
LOC_Os03g29850
Os.15732.1.S1_s_at--521--7051Chr03:16963153..16963177 (25 bp)
GTAAGTTCGTCGTGAAATTAGCATG
LOC_Os03g29850
Os.15732.1.S1_s_at--890--6711Chr03:16963149..16963173 (25 bp)
GTTCGTCGTGAAATTAGCATGTGTA
LOC_Os03g29850
Os.15732.1.S1_s_at--501--4011Chr03:16963146..16963170 (25 bp)
CGTCGTGAAATTAGCATGTGTAAAG
LOC_Os03g29850
Os.15732.1.S1_s_at--497--9111Chr03:16963111..16963135 (25 bp)
TCCAACCAAAGTTTCAGGATTATTT
LOC_Os03g29850
Os.15732.1.S1_s_at--198--4371Chr03:16963106..16963130 (25 bp)
CCAAAGTTTCAGGATTATTTATAGC
LOC_Os03g29850
Target Sequence 
ATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTT
GTGCCANTCCAACCAAAGTTTCAGGATTATTTATAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15732.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis