Browse Element(s) Details


OsAffx.25287.1.S1_at

Description tigr:9631.m02912
TID=OsAffx.25287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2984011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29790OsAffx.22947.1.S1_x_at11/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.3.S1_x_at5/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.2.S1_x_at3/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.5.S1_x_at1/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29810Os.34521.1.S1_at11/113+16949262..16952730Clp protease family protein, expressed
LOC_Os03g29830Os.28409.4.S1_s_at11/113+16954199..16957297expressed protein
LOC_Os03g29830OsAffx.25286.1.S1_at10/113+16954199..16957297expressed protein
LOC_Os03g29840OsAffx.25287.1.S1_at11/113+16960984..16961997hypothetical protein
LOC_Os03g29850Os.15732.1.S1_s_at11/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.17065.1.S1_at8/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.57162.1.S1_x_at1/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.57162.1.S1_at1/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29864OsAffx.25288.1.S1_s_at11/113+16969392..16977744retrotransposon protein, putative, unclassified, expressed
LOC_Os03g29880Os.14919.1.S1_at4/113+16979721..16984701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29900OsAffx.29313.1.S1_at1/113+16986909..16990220transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25287.1.S1_at--328--3351Chr03:16961311..16961335 (25 bp)
CACCGAATTTGGGAATCACAGTCAC
LOC_Os03g29840
OsAffx.25287.1.S1_at--311--8651Chr03:16961320..16961344 (25 bp)
TGGGAATCACAGTCACCGGCGAGGA
LOC_Os03g29840
OsAffx.25287.1.S1_at--1145--6131Chr03:16961786..16961807 (22 bp)
GAGGGTGGATTTCTCATATGACCGT
LOC_Os03g29840
OsAffx.25287.1.S1_at--923--7931Chr03:16961789..16961813 (25 bp)
GGATTTCTCATATGACCGTCAAGGA
LOC_Os03g29840
OsAffx.25287.1.S1_at--801--9331Chr03:16961837..16961861 (25 bp)
TCGAAGAAGACGTTGTGGAACTCGT
LOC_Os03g29840
OsAffx.25287.1.S1_at--30--10851Chr03:16961849..16961873 (25 bp)
TTGTGGAACTCGTAGATCGCCGGGA
LOC_Os03g29840
OsAffx.25287.1.S1_at--675--6371Chr03:16961863..16961887 (25 bp)
GATCGCCGGGAAGAGATTTGCGCAT
LOC_Os03g29840
OsAffx.25287.1.S1_at--176--1271Chr03:16961876..16961900 (25 bp)
AGATTTGCGCATGTTGCATGGTGAA
LOC_Os03g29840
OsAffx.25287.1.S1_at--150--8871Chr03:16961919..16961943 (25 bp)
TGAGGTCGCGCCAGGACCTACAGAA
LOC_Os03g29840
OsAffx.25287.1.S1_at--883--7231Chr03:16961923..16961947 (25 bp)
GTCGCGCCAGGACCTACAGAAGATG
LOC_Os03g29840
OsAffx.25287.1.S1_at--2--1331Chr03:16961943..16961967 (25 bp)
AGATGGCGAGGCACATGAGCACCGA
LOC_Os03g29840
Target Sequence 
CACCGAATTTGGGAATCACAGTCACCGGCGAGGAGGTGTTGGCGGCGAGACCGTGGGAGGGAGAGGGGGAGGAGGAGGAG
AAGGAGAAGAAGAGCCCGCCTCCTGTCGCCGTCGCCGCCGTGCATCGCTACCGGAGCCACCGCCGCCACCTGAGAACCGC
CACCGGAGCCGCCGCCTGTTGGGAGGGAGGAGGAGAGGGTGCTGATGGAGGAGGAGGAGGGTGGATTTCTCATATGACCG
TCAAGGAAAACCCTTTTTCTAGTAGTGTGGTCGAAGAAGACGTTGTGGAACTCGTAGATCGCCGGGAAGAGATTTGCGCA
TGTTGCATGGTGAAGGCGGGGGTCATGGAGGATGAGGTCGCGCCAGGACCTACAGAAGATGGCGAGGCACATGAGCACCG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis