Browse Element(s) Details


Os.28409.4.S1_s_at

Description gb:AK105328.1
DB_XREF= gi:32990537
TID=Os.28409.4
CNT=45
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acyl-CoA:1-acylglycerol-3-phosphate acyltransferase (B1100D10.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-A07, full insert sequence.
FL= gb:AK105328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2983011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29770OsAffx.25285.1.S1_at11/113+16929907..16930680EF hand family protein, expressed
LOC_Os03g29790OsAffx.22947.1.S1_x_at11/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.3.S1_x_at5/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.2.S1_x_at3/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.5.S1_x_at1/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29810Os.34521.1.S1_at11/113+16949262..16952730Clp protease family protein, expressed
LOC_Os03g29830Os.28409.4.S1_s_at11/113+16954199..16957297expressed protein
LOC_Os03g29830OsAffx.25286.1.S1_at10/113+16954199..16957297expressed protein
LOC_Os03g29840OsAffx.25287.1.S1_at11/113+16960984..16961997hypothetical protein
LOC_Os03g29850Os.15732.1.S1_s_at11/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.17065.1.S1_at8/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.57162.1.S1_x_at1/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.57162.1.S1_at1/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29864OsAffx.25288.1.S1_s_at11/113+16969392..16977744retrotransposon protein, putative, unclassified, expressed
LOC_Os03g29880Os.14919.1.S1_at4/113+16979721..16984701retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28409.4.S1_s_at--708--10051Chr03:16956821..16956845 (25 bp)
TAGTTAAACCTGACGATCCATTGCA
LOC_Os03g29830
Os.28409.4.S1_s_at--694--551Chr03:16956836..16956860 (25 bp)
ATCCATTGCAGACATCTTGCGCCGT
LOC_Os03g29830
Os.28409.4.S1_s_at--580--1991Chr03:16956862..16956886 (25 bp)
ACTCCCGTCAGCTAGTGCAGAATTG
LOC_Os03g29830
Os.28409.4.S1_s_at--269--451Chr03:16956920..16956944 (25 bp)
ATCTATTTGTGCCATCTAGTGCAAA
LOC_Os03g29830
Os.28409.4.S1_s_at--541--2411Chr03:16956942..16956966 (25 bp)
AAAAATTGCGTCTCTTGCCCTCTGT
LOC_Os03g29830
Os.28409.4.S1_s_at--622--10691Chr03:16956956..16956980 (25 bp)
TTGCCCTCTGTAACGCTATTTTATC
LOC_Os03g29830
Os.28409.4.S1_s_at--526--4871Chr03:16956970..16956994 (25 bp)
GCTATTTTATCTTGGTACGTGGGTA
LOC_Os03g29830
Os.28409.4.S1_s_at--192--10211Chr03:16957033..16957057 (25 bp)
TATTATCATGCTGCGCTTTAGCGGG
LOC_Os03g29830
Os.28409.4.S1_s_at--793--9851Chr03:16957078..16957102 (25 bp)
TACAGCTACTTGCTCTATACAGGAA
LOC_Os03g29830
Os.28409.4.S1_s_at--278--6851Chr03:16957116..16957140 (25 bp)
GTTTGAGTTCCTGTTGTCAACCTTA
LOC_Os03g29830
Os.28409.4.S1_s_at--686--7671Chr03:16957186..16957210 (25 bp)
GGGTTCAGAACATCCTTTTATTCTA
LOC_Os03g29830
Target Sequence 
TAGTTAAACCTGACGATCCATTGCAGACATCTTGCGCCGTCACTCCCGTCAGCTAGTGCAGAATTGGGAGCTCCCTTGTA
GTAGTATTACAGGCATTCAATCTATTTGTGCCATCTAGTGCAAAAATTGCGTCTCTTGCCCTCTGTAACGCTATTTTATC
TTGGTACGTGGGTAAGCAAAAGCTTGCCGTGATAAAATACAGCGAATTATTTTATTATCATGCTGCGCTTTAGCGGGTTT
CGATCTAAATATAAAACTACAGCTACTTGCTCTATACAGGAAGTTGGGTTTGGCTGTTTGAGTTCCTGTTGTCAACCTTA
GAAAACTTTAGCTGTTAATATGTGTAAACGTGTATGGATTGTAAAGGGTTCAGAACATCCTTTTATTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28409.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis