Browse Element(s) Details


OsAffx.25285.1.S1_at

Description tigr:9631.m02905
TID=OsAffx.25285.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2977011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29750Os.11643.1.S1_at11/113+16903540..16909712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g29760Os.10440.1.S1_a_at11/113+16920185..16925726CCAAT-box transcription factor complex WHAP3, putative, expressed
LOC_Os03g29770OsAffx.25285.1.S1_at11/113+16929907..16930680EF hand family protein, expressed
LOC_Os03g29790OsAffx.22947.1.S1_x_at11/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.3.S1_x_at5/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.2.S1_x_at3/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.5.S1_x_at1/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29810Os.34521.1.S1_at11/113+16949262..16952730Clp protease family protein, expressed
LOC_Os03g29830Os.28409.4.S1_s_at11/113+16954199..16957297expressed protein
LOC_Os03g29830OsAffx.25286.1.S1_at10/113+16954199..16957297expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25285.1.S1_at--936--1291Chr03:16930287..16930311 (25 bp)
AGATGCGCCGCATCATGCTCGCCGT
LOC_Os03g29770
OsAffx.25285.1.S1_at--847--1111Chr03:16930110..16930134 (25 bp)
AGTGACGCCGGCCACGTCATCGCAA
LOC_Os03g29770
OsAffx.25285.1.S1_at--534--531Chr03:16930092..16930116 (25 bp)
ATCGCAACCGTTGCATCGGATCGGG
LOC_Os03g29770
OsAffx.25285.1.S1_at--107--4031Chr03:16930084..16930108 (25 bp)
CGTTGCATCGGATCGGGCTTGTTTT
LOC_Os03g29770
OsAffx.25285.1.S1_at--555--10351Chr03:16930054..16930078 (25 bp)
TTTTTTACTCTTCACGTGTACCGTG
LOC_Os03g29770
OsAffx.25285.1.S1_at--259--1911Chr03:16930041..16930065 (25 bp)
ACGTGTACCGTGTCCGTGTGTGTCG
LOC_Os03g29770
OsAffx.25285.1.S1_at--585--1051Chr03:16930016..16930040 (25 bp)
AGGTGTCGGTGTACGTGTACGTATC
LOC_Os03g29770
OsAffx.25285.1.S1_at--1077--6991Chr03:16930006..16930030 (25 bp)
GTACGTGTACGTATCACAGGTGGCA
LOC_Os03g29770
OsAffx.25285.1.S1_at--1109--371Chr03:16929994..16930018 (25 bp)
ATCACAGGTGGCAACGTACCTCTCT
LOC_Os03g29770
OsAffx.25285.1.S1_at--132--6991Chr03:16929979..16930003 (25 bp)
GTACCTCTCTGCTACGCTTATCAAA
LOC_Os03g29770
OsAffx.25285.1.S1_at--221--3291Chr03:16929958..16929982 (25 bp)
CAAACTGGAGACTACTCTGCTTTGA
LOC_Os03g29770
Target Sequence 
AGATGCGCCGCATCATGCTCGCCGTCGCCGACGGCCTCGGCTCCCAGCCGCTCCAGGTCGCCGTCGACGACGAGGGGGGC
AGCTTCCTCCTCGAGGCCGCCGAGCACGAGGCCGCCTCCATCGCCGCCAAGATCGACGCCCAGCGCGCCGCCGATGCCGC
CGCCGCCGCCGACGCCAAGTGACGCCGGCCACGTCATCGCAACCGTTGCATCGGATCGGGCTTGTTTTTTTTTTTTTTTA
CTCTTCACGTGTACCGTGTCCGTGTGTGTCGAGGTGTCGGTGTACGTGTACGTATCACAGGTGGCAACGTACCTCTCTGC
TACGCTTATCAAACTGGAGACTACTCTGCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis