Browse Element(s) Details


Os.11660.1.S1_at

Description gb:AK058633.1
DB_XREF= gi:32968651
TID=Os.11660.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D01, full insert sequence.
FL= gb:AK102928.1 gb:AK058633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4954011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49490OsAffx.14345.1.S1_at11/114+29296169..29298855protein phosphatase 2C family protein, putative, expressed
LOC_Os04g49500Os.53780.1.S1_at11/114+29303288..29308363U-box domain containing protein, expressed
LOC_Os04g49510Os.282.2.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49510Os.282.1.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49520Os.55596.1.S1_at10/114+29316733..29319450PPR868-14, putative, expressed
LOC_Os04g49530Os.47740.1.S1_at11/114+29319648..29323458expressed protein
LOC_Os04g49540Os.11660.1.S1_at11/114+29322890..29325612expressed protein
LOC_Os04g49550OsAffx.26540.1.S1_s_at11/114+29333054..29334019expressed protein
LOC_Os04g49550Os.54859.1.S1_at10/114+29333054..29334019expressed protein
LOC_Os04g49560Os.54479.1.S1_at11/114+29337808..29344158DHHC zinc finger domain containing protein, expressed
LOC_Os04g49570Os.15729.2.S1_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.2.S1_x_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.1.S1_at4/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11660.1.S1_at--1019--10271Chr04:29323736..29323760 (25 bp)
TTTGCTGCTGCTTCAACTGAAGTGG
LOC_Os04g49540
Os.11660.1.S1_at--63--3551Chr04:29323666..29323690 (25 bp)
CATCCCGTGTCAAAGCTGAGCATGA
LOC_Os04g49540
Os.11660.1.S1_at--784--2211Chr04:29323448..29323472 (25 bp)
ACAAGTTCTCTTCTAGCCAAAGGAA
LOC_Os04g49540
Os.11660.1.S1_at--992--9591Chr04:29323392..29323416 (25 bp)
TCATCAAACGAGTCATCTGGGAGTC
LOC_Os04g49540
Os.11660.1.S1_at--859--8231Chr04:29323367..29323391 (25 bp)
GGCAAAACTCGTTATCTGGCACAGT
LOC_Os04g49540
Os.11660.1.S1_at--612--2971Chr04:29323332..29323356 (25 bp)
AATGGTCAACCAACCTTGGAGTCTG
LOC_Os04g49540
Os.11660.1.S1_at--290--2411Chr04:29323307..29323331 (25 bp)
AAAAGCGTAGCCCTGACAACAACTC
LOC_Os04g49540
Os.11660.1.S1_at--49--6531Chr04:29323248..29323272 (25 bp)
GATTTGTGTCAACTCCTTAGCACCT
LOC_Os04g49540
Os.11660.1.S1_at--979--3651Chr04:29323233..29323257 (25 bp)
CTTAGCACCTGCTTCAACAGCTTGT
LOC_Os04g49540
Os.11660.1.S1_at--163--3411Chr04:29323216..29323240 (25 bp)
CAGCTTGTCAGCTTCGTTGTGTAGT
LOC_Os04g49540
Os.11660.1.S1_at--625--8091Chr04:29323150..29323174 (25 bp)
GGACCTGTAGGCTTACGTAGTGACT
LOC_Os04g49540
Target Sequence 
TTTGCTGCTGCTTCAACTGAAGTGGATGAGGAGACTGCTAAACAAAATGTTTATCAAAAGGATGGGGTCCCATCCCGTGT
CAAAGCTGAGCATGAAGCTTTGCAGACAAGGCTAGAGGCTTCAAATAATGTTAACAAGTTCTCTTCTAGCCAAAGGAATA
TGCAGCTTAGTGACAGGCAACTAAGATTATCATCAAACGAGTCATCTGGGAGTCGGCAAAACTCGTTATCTGGCACAGTG
AAGAACCAAAATGGTCAACCAACCTTGGAGTCTGAAAAGCGTAGCCCTGACAACAACTCACAATCAAAAAGTCTGGAAGA
ACAATAAATTTGTGATTTGTGTCAACTCCTTAGCACCTGCTTCAACAGCTTGTCAGCTTCGTTGTGTAGTGTACTGAGGA
CTCAGGTTTTAGCTGTNGATAGAAGAATTTTGGACCTGTAGGCTTACGTAGTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis