Browse Element(s) Details


OsAffx.14345.1.S1_at

Description tigr:9632.m04803
TID=OsAffx.14345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT005462 putative protein phosphatase 2C
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4949011/11protein phosphatase 2C family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49430OsAffx.4128.1.S1_at11/114+29274839..29279862Regulator of chromosome condensation family protein, expressed
LOC_Os04g49440OsAffx.14343.1.S1_at11/114+29280376..29281215RNA recognition motif, putative, expressed
LOC_Os04g49450Os.5335.1.S1_at11/114+29281866..29284686myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g49460Os.54481.2.S1_at8/114+29288564..29289733Protein kinase domain containing protein, expressed
LOC_Os04g49480OsAffx.14344.1.S1_at11/114+29294790..29295632Legume lectins beta domain containing protein
LOC_Os04g49490OsAffx.14345.1.S1_at11/114+29296169..29298855protein phosphatase 2C family protein, putative, expressed
LOC_Os04g49500Os.53780.1.S1_at11/114+29303288..29308363U-box domain containing protein, expressed
LOC_Os04g49510Os.282.2.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49510Os.282.1.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49520Os.55596.1.S1_at10/114+29316733..29319450PPR868-14, putative, expressed
LOC_Os04g49530Os.47740.1.S1_at11/114+29319648..29323458expressed protein
LOC_Os04g49540Os.11660.1.S1_at11/114+29322890..29325612expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14345.1.S1_at--202--8891Chr04:29297360..29297384 (25 bp)
TGAGGCAGGAACTTCGATCCCTTCA
LOC_Os04g49490
OsAffx.14345.1.S1_at--820--10531Chr04:29297339..29297363 (25 bp)
TTCATCCCGACGATTCGCAAATTGT
LOC_Os04g49490
OsAffx.14345.1.S1_at--310--5211Chr04:29296856..29296880 (25 bp)
GAATTCGCTCTTGATCCATCTATGA
LOC_Os04g49490
OsAffx.14345.1.S1_at--625--1851Chr04:29296806..29296830 (25 bp)
ACGACGGCCTGTTCTAACATCAGAG
LOC_Os04g49490
OsAffx.14345.1.S1_at--186--291Chr04:29296747..29296771 (25 bp)
ATAGTTTCTTTATCTTCGCATCGGA
LOC_Os04g49490
OsAffx.14345.1.S1_at--825--10811Chr04:29296682..29296705 (24 bp)
TTGTCCACAACAATCCACGAGAAGG
LOC_Os04g49490
OsAffx.14345.1.S1_at--732--5971Chr04:29296487..29296511 (25 bp)
GAGAAAGGAGTACGCCGCTTCTTCC
LOC_Os04g49490
OsAffx.14345.1.S1_at--1141--4111Chr04:29296472..29296496 (25 bp)
CGCTTCTTCCATGATGACATCACGG
LOC_Os04g49490
OsAffx.14345.1.S1_at--330--391Chr04:29296454..29296478 (25 bp)
ATCACGGTTGTGGTTGTTTTCATTG
LOC_Os04g49490
OsAffx.14345.1.S1_at--379--10791Chr04:29296432..29296456 (25 bp)
TTGATCATGAGCTCCTACAAGATGG
LOC_Os04g49490
OsAffx.14345.1.S1_at--1151--9631Chr04:29296385..29296409 (25 bp)
TCAGTTCGCGGATTTGTTGACTCAG
LOC_Os04g49490
Target Sequence 
TGAGGCAGGAACTTCGATCCCTTCATCCCGACGATTCGCAAATTGTTGTTCTTAAGAATGGTGTATGGCGCATCAAAGGC
ATAATACAGGTTTCAAGGTCTATAGGTGATGCATACTTGAAGAAGCAAGAATTCGCTCTTGATCCATCTATGACCCGTTT
CCACCTTTCTGAGCCTCTACGACGGCCTGTTCTAACATCAGAGCCGTCTATATATACGAGAGTTCTTCATTCACAAGATA
GTTTCTTTATCTTCGCATCGGATGGATTATGGGAGCACTTGACAAACCAGCAAGCAGTTGAAATTGTCCACAACAATCCA
CGAGAAGGTATTGCAAGGAGGTTAGTAAAAGCAGCTTTGAAAGAAGCTGCCCGGAAGAGGGAAATGAAGTACAATGATAT
CAAGAAACTTGAGAAAGGAGTACGCCGCTTCTTCCATGATGACATCACGGTTGTGGTTGTTTTCATTGATCATGAGCTCC
TACAAGATGGGGATGAGTCTACTCCTGAAATTTCAGTTCGCGGATTTGTTGACTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis