Browse Element(s) Details


OsAffx.14343.1.S1_at

Description tigr:9632.m04798
TID=OsAffx.14343.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to RNA-binding glycine-rich protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4944011/11RNA recognition motif, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49380OsAffx.25217.1.S1_x_at9/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49380OsAffx.25217.2.S1_x_at5/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49394Os.33624.3.S1_x_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.14342.1.S1_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.25216.1.S1_x_at7/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49410Os.2369.1.S1_a_at11/114+29266053..29269509Alpha-expansin 13 precursor, putative, expressed
LOC_Os04g49420NANA4+29269861..29270469Histone H4, putative, expressed
LOC_Os04g49430OsAffx.4128.1.S1_at11/114+29274839..29279862Regulator of chromosome condensation family protein, expressed
LOC_Os04g49440OsAffx.14343.1.S1_at11/114+29280376..29281215RNA recognition motif, putative, expressed
LOC_Os04g49450Os.5335.1.S1_at11/114+29281866..29284686myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g49460Os.54481.2.S1_at8/114+29288564..29289733Protein kinase domain containing protein, expressed
LOC_Os04g49480OsAffx.14344.1.S1_at11/114+29294790..29295632Legume lectins beta domain containing protein
LOC_Os04g49490OsAffx.14345.1.S1_at11/114+29296169..29298855protein phosphatase 2C family protein, putative, expressed
LOC_Os04g49500Os.53780.1.S1_at11/114+29303288..29308363U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14343.1.S1_at--879--4771Chr04:29280412..29280436 (25 bp)
GCTCCACCTAGAACCATCAGCGTCT
LOC_Os04g49440
OsAffx.14343.1.S1_at--744--7551Chr04:29280478..29280927 (25 bp)
GTGGCCTCCTCCGTTAATCTTGTGA
LOC_Os04g49440
OsAffx.14343.1.S1_at--911--5391Chr04:29280941..29280965 (25 bp)
GAAGCGGCCGAGAGGCTTCGCTTTC
LOC_Os04g49440
OsAffx.14343.1.S1_at--984--6011Chr04:29280950..29280974 (25 bp)
GAGAGGCTTCGCTTTCCTGTCTTAT
LOC_Os04g49440
OsAffx.14343.1.S1_at--351--4891Chr04:29280960..29280984 (25 bp)
GCTTTCCTGTCTTATGCCAGTGAGG
LOC_Os04g49440
OsAffx.14343.1.S1_at--641--4271Chr04:29280965..29280989 (25 bp)
CCTGTCTTATGCCAGTGAGGAGGAA
LOC_Os04g49440
OsAffx.14343.1.S1_at--924--7991Chr04:29280983..29281007 (25 bp)
GGAGGAATCCAAGAACGCCATGGAA
LOC_Os04g49440
OsAffx.14343.1.S1_at--284--3231Chr04:29280992..29281016 (25 bp)
CAAGAACGCCATGGAAGGGATGCAA
LOC_Os04g49440
OsAffx.14343.1.S1_at--701--8511Chr04:29281003..29281064 (25 bp)
TGGAAGGGATGCAAGGCAAGTTCCT
LOC_Os04g49440
OsAffx.14343.1.S1_at--442--3231Chr04:29281157..29281179 (23 bp)
CAAGTTCCTGGATGGGAGAGTGATC
LOC_Os04g49440
OsAffx.14343.1.S1_at--487--9271Chr04:29281160..29281184 (25 bp)
TCCTGGATGGGAGAGTGATCTTTGT
LOC_Os04g49440
Target Sequence 
GCTCCACCTAGAACCATCAGCGTCTCCCTCGCTGCCTCCCCCTCATCCTCACACCCGCTTCGTCCGGTGGCCTCCTCCGT
TAATCTTGTGATGGAAAGAGTAGCGAAGCGGCCGAGAGGCTTCGCTTTCCTGTCTTATGCCAGTGAGGAGGAATCCAAGA
ACGCCATGGAAGGGATGCAAGGCAAGTTCCTGGATGGGAGAGTGATCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis