Browse Element(s) Details


Os.2369.1.S1_a_at

Description gb:AF247165.1
DB_XREF= gi:7407664
TID=Os.2369.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2369 (NCBI UniGene Cluster)
DEF=Oryza sativa alpha-expansin OsEXPA10 mRNA, complete cds.
PROD=alpha-expansin OsEXPA10
FL= gb:AK062225.1 gb:AF247165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4941011/11Alpha-expansin 13 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49370Os.26511.1.S1_at11/114+29246807..29247934expressed protein
LOC_Os04g49380OsAffx.25217.1.S1_x_at9/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49380OsAffx.25217.2.S1_x_at5/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49394Os.33624.3.S1_x_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.14342.1.S1_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.25216.1.S1_x_at7/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49410Os.2369.1.S1_a_at11/114+29266053..29269509Alpha-expansin 13 precursor, putative, expressed
LOC_Os04g49420NANA4+29269861..29270469Histone H4, putative, expressed
LOC_Os04g49430OsAffx.4128.1.S1_at11/114+29274839..29279862Regulator of chromosome condensation family protein, expressed
LOC_Os04g49440OsAffx.14343.1.S1_at11/114+29280376..29281215RNA recognition motif, putative, expressed
LOC_Os04g49450Os.5335.1.S1_at11/114+29281866..29284686myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g49460Os.54481.2.S1_at8/114+29288564..29289733Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2369.1.S1_a_at--886--4811Chr04:29268942..29268966 (25 bp)
GCTTCTTCCTGACAGTCCTAATTAG
LOC_Os04g49410
Os.2369.1.S1_a_at--1115--7251Chr04:29268956..29268980 (25 bp)
GTCCTAATTAGCAATGTCGGTGGTG
LOC_Os04g49410
Os.2369.1.S1_a_at--667--4751Chr04:29269195..29269219 (25 bp)
GCTCTAGAGAGGAAAGGGTACCAAT
LOC_Os04g49410
Os.2369.1.S1_a_at--539--10371Chr04:29269240..29269264 (25 bp)
TTTTTTCTGATCCTATGAGTTGGAT
LOC_Os04g49410
Os.2369.1.S1_a_at--924--9251Chr04:29269280..29269304 (25 bp)
TCCTCTGAGGAACGATAATAGTATC
LOC_Os04g49410
Os.2369.1.S1_a_at--100--5591Chr04:29269315..29269339 (25 bp)
GAAATGTTTAGTGCAGAGCCTCCAA
LOC_Os04g49410
Os.2369.1.S1_a_at--430--5871Chr04:29269330..29269354 (25 bp)
GAGCCTCCAATAGTAGTCCAACATA
LOC_Os04g49410
Os.2369.1.S1_a_at--606--7771Chr04:29269360..29269384 (25 bp)
GGTGCTCATAAATGTGGCATGTACC
LOC_Os04g49410
Os.2369.1.S1_a_at--913--6971Chr04:29269380..29269404 (25 bp)
GTACCATTTGGAACTCTGATAATTG
LOC_Os04g49410
Os.2369.1.S1_a_at--1020--10851Chr04:29269387..29269411 (25 bp)
TTGGAACTCTGATAATTGCACTACA
LOC_Os04g49410
Os.2369.1.S1_a_at--707--10731Chr04:29269402..29269426 (25 bp)
TTGCACTACAGAGGCTTGATGTACC
LOC_Os04g49410
Target Sequence 
GCTTCTTCCTGACAGTCCTAATTAGCAATGTCGGTGGTGCTGGCGATGTCCGATCAGNGAANATCAAAGGAACGGAGTCC
GGNTGGCTCTCGATGGGCCGCAACTGGGGGCAGATATGGCACATCAACTCTGATTTCANGGGACAGCCTCTCTCCTTCNA
GCTCACCTCAAGTGATGGAAAAACATTGACCAACTACNACGTGGNCCCTAAGGAGTGGGACTTCNGCAAAACATACACTG
GCAAGCAGNTCCTGCTCTAGAGAGGAAAGGGTACCAATAGCAGNTTACAGNTACAAATTTTTTTCTGATCCTATGAGTTG
GATTGNACTATTGTATATTCCTCTGAGGAACGATAATAGTATCATTANAGAAAGAAATGTTTAGTGCAGAGCCTCCAATA
GTAGTCCAACATAGAANAGGTGCTCATAAATGTGGCATGTACCATTTGGAACTCTGATAATTGCACTACAGAGGCTTGAT
GTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2369.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis