Browse Element(s) Details


Os.54481.2.S1_at

Description gb:AK108779.1
DB_XREF= gi:32993988
TID=Os.54481.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-A03, full insert sequence.
FL= gb:AK108779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g494608/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49410Os.2369.1.S1_a_at11/114+29266053..29269509Alpha-expansin 13 precursor, putative, expressed
LOC_Os04g49420NANA4+29269861..29270469Histone H4, putative, expressed
LOC_Os04g49430OsAffx.4128.1.S1_at11/114+29274839..29279862Regulator of chromosome condensation family protein, expressed
LOC_Os04g49440OsAffx.14343.1.S1_at11/114+29280376..29281215RNA recognition motif, putative, expressed
LOC_Os04g49450Os.5335.1.S1_at11/114+29281866..29284686myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g49460Os.54481.2.S1_at8/114+29288564..29289733Protein kinase domain containing protein, expressed
LOC_Os04g49480OsAffx.14344.1.S1_at11/114+29294790..29295632Legume lectins beta domain containing protein
LOC_Os04g49490OsAffx.14345.1.S1_at11/114+29296169..29298855protein phosphatase 2C family protein, putative, expressed
LOC_Os04g49500Os.53780.1.S1_at11/114+29303288..29308363U-box domain containing protein, expressed
LOC_Os04g49510Os.282.2.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49510Os.282.1.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54481.2.S1_at--287--571NONE
ATCCACTCCCATCACCGGGAGGTGA
NONE
Os.54481.2.S1_at--1109--3411NONE
CAGAGAGTTGTATGCTTCGTACGGT
NONE
Os.54481.2.S1_at--981--1231NONE
AGTTGTATGCTTCGTACGGTCGTAC
NONE
Os.54481.2.S1_at--612--9391Chr04:29288674..29288698 (25 bp)
TCGTACGGTCGTACCGCGAGCCGAG
LOC_Os04g49460
Os.54481.2.S1_at--561--5871Chr04:29288652..29288676 (25 bp)
GAGCCGCCGCGCGATGATTTGGTTT
LOC_Os04g49460
Os.54481.2.S1_at--88--6511Chr04:29288637..29288661 (25 bp)
GATTTGGTTTGTTGCCGTATGTAAA
LOC_Os04g49460
Os.54481.2.S1_at--951--8751Chr04:29288609..29288633 (25 bp)
TGTAGCAGAGTTGCACGACTTTCTT
LOC_Os04g49460
Os.54481.2.S1_at--167--1351Chr04:29288603..29288627 (25 bp)
AGAGTTGCACGACTTTCTTGTTCTT
LOC_Os04g49460
Os.54481.2.S1_at--800--5091Chr04:29288597..29288621 (25 bp)
GCACGACTTTCTTGTTCTTGTAACT
LOC_Os04g49460
Os.54481.2.S1_at--183--9571Chr04:29288582..29288606 (25 bp)
TCTTGTAACTTGTTCGTATCGTGTA
LOC_Os04g49460
Os.54481.2.S1_at--180--6911Chr04:29288567..29288591 (25 bp)
GTATCGTGTAACATGTTCAGTTCTT
LOC_Os04g49460
Target Sequence 
ATCCACTCCCATCACCGGGAGGTGAGTATAGCAGAGAGTTGTATGCTTCGTACGGTCGTACCGCGAGCCGAGCCGCCGCG
CGATGATTTGGTTTGTTGCCGTATGTAAAAAGTGTAGCAGAGTTGCACGACTTTCTTGTTCTTGTAACTTGTTCGTATCG
TGTAACATGTTCAGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54481.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis