Browse Element(s) Details


Os.282.2.S1_a_at

Description gb:AK059786.1
DB_XREF= gi:32969804
TID=Os.282.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for OsCDPK7, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D08, full insert sequence.
FL= gb:AK059786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4951011/11Calcium-dependent protein kinase, isoform 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49460Os.54481.2.S1_at8/114+29288564..29289733Protein kinase domain containing protein, expressed
LOC_Os04g49480OsAffx.14344.1.S1_at11/114+29294790..29295632Legume lectins beta domain containing protein
LOC_Os04g49490OsAffx.14345.1.S1_at11/114+29296169..29298855protein phosphatase 2C family protein, putative, expressed
LOC_Os04g49500Os.53780.1.S1_at11/114+29303288..29308363U-box domain containing protein, expressed
LOC_Os04g49510Os.282.2.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49510Os.282.1.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49520Os.55596.1.S1_at10/114+29316733..29319450PPR868-14, putative, expressed
LOC_Os04g49530Os.47740.1.S1_at11/114+29319648..29323458expressed protein
LOC_Os04g49540Os.11660.1.S1_at11/114+29322890..29325612expressed protein
LOC_Os04g49550OsAffx.26540.1.S1_s_at11/114+29333054..29334019expressed protein
LOC_Os04g49550Os.54859.1.S1_at10/114+29333054..29334019expressed protein
LOC_Os04g49560Os.54479.1.S1_at11/114+29337808..29344158DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.282.2.S1_a_at--469--2851Chr04:29312872..29312896 (25 bp)
AAGTCCATTTCCAAGCGCAAGCTCA
LOC_Os04g49510
Os.282.2.S1_a_at--1074--931Chr04:29312906..29312930 (25 bp)
AGGACATCGAAGACGTTCGCCGCGA
LOC_Os04g49510
Os.282.2.S1_a_at--118--9951Chr04:29312989..29313013 (25 bp)
TACGAGGACCAGCTATACGTGCACA
LOC_Os04g49510
Os.282.2.S1_a_at--632--1711Chr04:29312996..29313020 (25 bp)
ACCAGCTATACGTGCACATCGTCAT
LOC_Os04g49510
Os.282.2.S1_a_at--433--5911Chr04:29313040..29313064 (25 bp)
GAGCTCTTCGATCGCATCATACAGC
LOC_Os04g49510
Os.282.2.S1_a_at--705--531Chr04:29313050..29313074 (25 bp)
ATCGCATCATACAGCGCGGCCACTA
LOC_Os04g49510
Os.282.2.S1_a_at--958--2651Chr04:29313163..29313187 (25 bp)
AAGCCAGAAAACTTCCTGCTTGCCA
LOC_Os04g49510
Os.282.2.S1_a_at--1061--10651Chr04:29313175..29313199 (25 bp)
TTCCTGCTTGCCAACAAGGACGATG
LOC_Os04g49510
Os.282.2.S1_a_at--277--2931Chr04:29313190..29313214 (25 bp)
AAGGACGATGACCTCTCGCTCAAGG
LOC_Os04g49510
Os.282.2.S1_a_at--83--8931Chr04:29313198..29313222 (25 bp)
TGACCTCTCGCTCAAGGCCATAGAT
LOC_Os04g49510
Os.282.2.S1_a_at--413--3211Chr04:29313210..29313234 (25 bp)
CAAGGCCATAGATTTTGGTCTCTCA
LOC_Os04g49510
Target Sequence 
AAGTCCATTTCCAAGCGCAAGCTCATCACCAAGGAGGACATCGAAGACGTTCGCCGCGAGATCCAGATCATGCACCATCT
CTCGGGCCACAAGAACGTCGTCGCNATCAAGGGCGCCTACGAGGACCAGCTATACGTGCACATCGTCATGGAGCTCTGCG
CCGGCGGCGAGCTCTTCGATCGCATCATACAGCGCGGCCACTACAGCGAGCGGAAGGCCGCCGAGCTCACGCGGATCATC
GTTGGGGTCGTCGAGGCCTGCCACTCGCTCGGGGTCATGCACCGGGACCTCAAGCCAGAAAACTTCCTGCTTGCCAACAA
GGACGATGACCTCTCGCTCAAGGCCATAGATTTTGGTCTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.282.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis