Browse Element(s) Details


Os.54479.1.S1_at

Description gb:AK105286.1
DB_XREF= gi:32990495
TID=Os.54479.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54479 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-E08, full insert sequence.
FL= gb:AK105286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4956011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49510Os.282.2.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49510Os.282.1.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49520Os.55596.1.S1_at10/114+29316733..29319450PPR868-14, putative, expressed
LOC_Os04g49530Os.47740.1.S1_at11/114+29319648..29323458expressed protein
LOC_Os04g49540Os.11660.1.S1_at11/114+29322890..29325612expressed protein
LOC_Os04g49550OsAffx.26540.1.S1_s_at11/114+29333054..29334019expressed protein
LOC_Os04g49550Os.54859.1.S1_at10/114+29333054..29334019expressed protein
LOC_Os04g49560Os.54479.1.S1_at11/114+29337808..29344158DHHC zinc finger domain containing protein, expressed
LOC_Os04g49570Os.15729.2.S1_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.2.S1_x_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.1.S1_at4/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49580Os.10745.1.S1_at10/114+29352529..29358583CBF/Mak21 family protein, expressed
LOC_Os04g49590Os.54732.1.S1_at11/114+29358868..29362046regulatory protein, putative, expressed
LOC_Os04g49600OsAffx.4129.1.S1_at11/114+29362520..29363676hypothetical protein
LOC_Os04g49610Os.9407.1.S1_at11/114+29364754..29366574expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54479.1.S1_at--872--6531Chr04:29338359..29338383 (25 bp)
GATTTCAGAGCACCATCCTGCAAAG
LOC_Os04g49560
Os.54479.1.S1_at--692--1031Chr04:29338301..29338325 (25 bp)
AGGTCTCCATTCTCAGCAGTAGCAA
LOC_Os04g49560
Os.54479.1.S1_at--409--7751Chr04:29338274..29338298 (25 bp)
GGTGTCAATGAAGCGTCTGTCTCAG
LOC_Os04g49560
Os.54479.1.S1_at--861--431Chr04:29338209..29338233 (25 bp)
ATCTTCTCGTTCATCTGTTTACTGG
LOC_Os04g49560
Os.54479.1.S1_at--869--1951Chr04:29338189..29338213 (25 bp)
ACTGGGATCAGGAAGCTGGCCGCTT
LOC_Os04g49560
Os.54479.1.S1_at--699--7371Chr04:29338117..29338141 (25 bp)
GTGACCTTCTTTACACTGGACAGTC
LOC_Os04g49560
Os.54479.1.S1_at--393--7151Chr04:29338095..29338119 (25 bp)
GTCTATATTCTTTGGTGGACCTCTG
LOC_Os04g49560
Os.54479.1.S1_at--1--8111Chr04:29338079..29338103 (25 bp)
GGACCTCTGATGACAGATCCTGCAA
LOC_Os04g49560
Os.54479.1.S1_at--813--1191Chr04:29338049..29338073 (25 bp)
AGTTTCAGAGATCCTGGCGGTTCGA
LOC_Os04g49560
Os.54479.1.S1_at--174--8811Chr04:29337985..29338009 (25 bp)
TGTTCGTTCCTAGTGATCCCCAGAA
LOC_Os04g49560
Os.54479.1.S1_at--575--5551Chr04:29337963..29337987 (25 bp)
GAAAGATCGTTTCTCTAGGCTACCT
LOC_Os04g49560
Target Sequence 
GATTTCAGAGCACCATCCTGCAAAGCATTTCAATCCAATTTATCAGACATCAGCAAACAGGTCTCCATTCTCAGCAGTAG
CAAGTGGTGTCAATGAAGCGTCTGTCTCAGATATCAGCACAAGGAGGTTTGGTGCATCGAACGCAGACAGATCTTCTCGT
TCATCTGTTTACTGGGATCAGGAAGCTGGCCGCTTCGTCTCTTCCCAGGCAAACCATGGATCCAGCTCTCGTTTGCCCCG
TAGTGACCTTCTTTACACTGGACAGTCTATATTCTTTGGTGGACCTCTGATGACAGATCCTGCAACAAGAAGTTTCAGAG
ATCCTGGCGGTTCGAGCCAACGCGCTGGTGCTTCTCGGCCGCATCAGCTCCCCGTGTTCGTTCCTAGTGATCCCCAGAAA
GATCGTTTCTCTAGGCTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis