Browse Element(s) Details


Os.10745.1.S1_at

Description gb:AK103548.1
DB_XREF= gi:32988757
TID=Os.10745.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132E24, full insert sequence.
FL= gb:AK103548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4958010/11CBF/Mak21 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49550OsAffx.26540.1.S1_s_at11/114+29333054..29334019expressed protein
LOC_Os04g49550Os.54859.1.S1_at10/114+29333054..29334019expressed protein
LOC_Os04g49560Os.54479.1.S1_at11/114+29337808..29344158DHHC zinc finger domain containing protein, expressed
LOC_Os04g49570Os.15729.2.S1_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.2.S1_x_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.1.S1_at4/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49580Os.10745.1.S1_at10/114+29352529..29358583CBF/Mak21 family protein, expressed
LOC_Os04g49590Os.54732.1.S1_at11/114+29358868..29362046regulatory protein, putative, expressed
LOC_Os04g49600OsAffx.4129.1.S1_at11/114+29362520..29363676hypothetical protein
LOC_Os04g49610Os.9407.1.S1_at11/114+29364754..29366574expressed protein
LOC_Os04g49620Os.51206.1.S1_at11/114+29369164..29371427expressed protein
LOC_Os04g49630OsAffx.14346.1.S1_at10/114+29372531..29374632hypothetical protein
LOC_Os04g49640OsAffx.19542.3.S1_x_at3/114+29377372..29381311retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10745.1.S1_at--951--2791Chr04:29353439..29353462 (24 bp)
AAGATTCGTTGCTTCACTTGAAAAT
LOC_Os04g49580
Os.10745.1.S1_at--508--9811Chr04:29353377..29353401 (25 bp)
TAACGGACTTTAGTTCAGGCTCCTA
LOC_Os04g49580
Os.10745.1.S1_at--938--911Chr04:29353361..29353385 (25 bp)
AGGCTCCTACGCAACAGTTTTCAGA
LOC_Os04g49580
Os.10745.1.S1_at--1045--3091Chr04:29352975..29352999 (25 bp)
CAAGTTCCCCTTGCTTTCTACAGAA
LOC_Os04g49580
Os.10745.1.S1_at--371--10051NONE
TAGATATTAGCAACAGCTCGCCCGC
NONE
Os.10745.1.S1_at--701--3471Chr04:29352779..29352803 (25 bp)
CAGGGTGTACCATCTTGATCCAAGT
LOC_Os04g49580
Os.10745.1.S1_at--892--3191Chr04:29352731..29352755 (25 bp)
CAATGGACCTGTTGTATGGCCTACC
LOC_Os04g49580
Os.10745.1.S1_at--277--871Chr04:29352716..29352740 (25 bp)
ATGGCCTACCATTTTAGTTTCATTT
LOC_Os04g49580
Os.10745.1.S1_at--508--6611Chr04:29352654..29352678 (25 bp)
GTTGTTTTTAACAGTCCACCAGTGT
LOC_Os04g49580
Os.10745.1.S1_at--1123--1131Chr04:29352642..29352666 (25 bp)
AGTCCACCAGTGTTGCAAGTTTTGA
LOC_Os04g49580
Os.10745.1.S1_at--377--9951Chr04:29352594..29352618 (25 bp)
TACGCGGGTAATCTTTTGCTCTGAT
LOC_Os04g49580
Target Sequence 
AAGATTCGTTGCTTCACTTGAAAATGATCTCACTGTTCGGGNCAAAACTACTGAGATGAAAATAACGGACTTTAGTTCAG
GCTCCTACGCAACAGTTTTCAGAGATGAGGTACGACGGCGGATAAAACAAGTTCCCCTTGCTTTCTACAGAACTACNCCA
ACTTGTTTATTTCAAGAGTCAGATTTTCCTGGATGGACTTTTNGGGATCAATTCAAAAACATGGCAGAAACTAGTGTAGA
AGGCAATGGGATCAGTACGGTAGATATTAGCAACAGCTCGCCCGCCAAAAGGTTGCGGATGGAGACCTGAGTAGGGACCC
AGACAGGGTGTACCATCTTGATCCAAGTTTTGGACCGTTTAAGAGGGGGACCAATGGACCTGTTGTATGGCCTACCATTT
TAGTTTCATTTTGTTTTTTTAACATATTGGAAACAATTATGAAATTAAGTTGTTTTTAACAGTCCACCAGTGTTGCAAGT
TTTGAACTGAAAGGAGTGAAGTATGAATTACGCGGGTAATCTTTTGCTCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis