Browse Element(s) Details


OsAffx.14346.1.S1_at

Description tigr:9632.m04818
TID=OsAffx.14346.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4963010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49570Os.15729.2.S1_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.2.S1_x_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.1.S1_at4/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49580Os.10745.1.S1_at10/114+29352529..29358583CBF/Mak21 family protein, expressed
LOC_Os04g49590Os.54732.1.S1_at11/114+29358868..29362046regulatory protein, putative, expressed
LOC_Os04g49600OsAffx.4129.1.S1_at11/114+29362520..29363676hypothetical protein
LOC_Os04g49610Os.9407.1.S1_at11/114+29364754..29366574expressed protein
LOC_Os04g49620Os.51206.1.S1_at11/114+29369164..29371427expressed protein
LOC_Os04g49630OsAffx.14346.1.S1_at10/114+29372531..29374632hypothetical protein
LOC_Os04g49640OsAffx.19542.3.S1_x_at3/114+29377372..29381311retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49650Os.12323.1.S1_a_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.2.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.1.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49660OsAffx.26384.4.S1_at3/114+29391364..29392042expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14346.1.S1_at--733--2531Chr04:29374573..29374597 (25 bp)
AACTAGCCCAGATAACTTTGCTTCA
LOC_Os04g49630
OsAffx.14346.1.S1_at--55--2531Chr04:29374560..29374584 (25 bp)
AACTTTGCTTCAACTGCTAGTGGAG
LOC_Os04g49630
OsAffx.14346.1.S1_at--928--5551Chr04:29374538..29374562 (25 bp)
GAGTAGTACACGAGTCGCGTAGCAA
LOC_Os04g49630
OsAffx.14346.1.S1_at--656--7231Chr04:29374525..29374549 (25 bp)
GTCGCGTAGCAACGTATCTGGCGTA
LOC_Os04g49630
OsAffx.14346.1.S1_at--987--6891Chr04:29374512..29374536 (25 bp)
GTATCTGGCGTAATCCTCACTTGCT
LOC_Os04g49630
OsAffx.14346.1.S1_at--770--9211Chr04:29374480..29374504 (25 bp)
TCCACACACCATTGGCCTAAGCTTA
LOC_Os04g49630
OsAffx.14346.1.S1_at--666--8431Chr04:29374467..29374491 (25 bp)
GGCCTAAGCTTATGGGCTGATCAAA
LOC_Os04g49630
OsAffx.14346.1.S1_at--725--5591Chr04:29374095..29374163 (25 bp)
GAAATTAGTCCATCATCGTTACAAT
LOC_Os04g49630
OsAffx.14346.1.S1_at--880--2191NONE
ACAAAAGAGGCCAGCGGCGCAGCCA
NONE
OsAffx.14346.1.S1_at--169--5891Chr04:29372686..29372710 (25 bp)
GAGCGCATGACACTCGCTGCTAGAG
LOC_Os04g49630
OsAffx.14346.1.S1_at--916--3791Chr04:29372674..29372698 (25 bp)
CTCGCTGCTAGAGCGCTGGTGCCTA
LOC_Os04g49630
Target Sequence 
AACTAGCCCAGATAACTTTGCTTCAACTGCTAGTGGAGTAGTACACGAGTCGCGTAGCAACGTATCTGGCGTAATCCTCA
CTTGCTCCACTGCTCCACACACCATTGGCCTAAGCTTATGGGCTGATCAAAGTATGGAAATTAGTAGCAGTGGGAAGAAA
TTAGTCCATCATCGTTACAATGGTCAACAAAAGAGGCCAGCGGCGCAGCCACACAGCCAGCAGCGGACCATGGACGTGGA
TGATGAGTGGCGCGGCGTGGGGCGGCGTCGTGGAATCATGGGCGATGAGCGGCGGCGCGAGCGCATGACACTCGCTGCTA
GAGCGCTGGTGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis