Browse Element(s) Details


OsAffx.4129.1.S1_at

Description tigr:9632.m04815
TID=OsAffx.4129.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4960011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49560Os.54479.1.S1_at11/114+29337808..29344158DHHC zinc finger domain containing protein, expressed
LOC_Os04g49570Os.15729.2.S1_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.2.S1_x_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.1.S1_at4/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49580Os.10745.1.S1_at10/114+29352529..29358583CBF/Mak21 family protein, expressed
LOC_Os04g49590Os.54732.1.S1_at11/114+29358868..29362046regulatory protein, putative, expressed
LOC_Os04g49600OsAffx.4129.1.S1_at11/114+29362520..29363676hypothetical protein
LOC_Os04g49610Os.9407.1.S1_at11/114+29364754..29366574expressed protein
LOC_Os04g49620Os.51206.1.S1_at11/114+29369164..29371427expressed protein
LOC_Os04g49630OsAffx.14346.1.S1_at10/114+29372531..29374632hypothetical protein
LOC_Os04g49640OsAffx.19542.3.S1_x_at3/114+29377372..29381311retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49650Os.12323.1.S1_a_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.2.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.1.S1_at11/114+29386589..29388086expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4129.1.S1_at--1103--7471Chr04:29363587..29363611 (25 bp)
GTGGACATTATATCCTTGGGAGGCT
LOC_Os04g49600
OsAffx.4129.1.S1_at--845--2071Chr04:29363583..29363607 (25 bp)
ACATTATATCCTTGGGAGGCTGGAA
LOC_Os04g49600
OsAffx.4129.1.S1_at--517--9231Chr04:29363575..29363599 (25 bp)
TCCTTGGGAGGCTGGAATTGTGCCC
LOC_Os04g49600
OsAffx.4129.1.S1_at--193--5211Chr04:29363561..29363585 (25 bp)
GAATTGTGCCCAGGGTGAGCAGATT
LOC_Os04g49600
OsAffx.4129.1.S1_at--673--10811Chr04:29363558..29363582 (25 bp)
TTGTGCCCAGGGTGAGCAGATTTGA
LOC_Os04g49600
OsAffx.4129.1.S1_at--38--9171Chr04:29363555..29363579 (25 bp)
TGCCCAGGGTGAGCAGATTTGAAGC
LOC_Os04g49600
OsAffx.4129.1.S1_at--281--8391Chr04:29363517..29363541 (25 bp)
GGCGACAATATCTCGGGCGGCTTGG
LOC_Os04g49600
OsAffx.4129.1.S1_at--462--2231Chr04:29363513..29363537 (25 bp)
ACAATATCTCGGGCGGCTTGGGTCA
LOC_Os04g49600
OsAffx.4129.1.S1_at--69--3951Chr04:29363500..29363524 (25 bp)
CGGCTTGGGTCAGCCGCCGGTTTGT
LOC_Os04g49600
OsAffx.4129.1.S1_at--941--4611Chr04:29363454..29363478 (25 bp)
GCGATGACCGTGTCCCCTGCACGTG
LOC_Os04g49600
OsAffx.4129.1.S1_at--397--7251Chr04:29363443..29363467 (25 bp)
GTCCCCTGCACGTGCGGACGAGTCG
LOC_Os04g49600
Target Sequence 
GTGGACATTATATCCTTGGGAGGCTGGAATTGTGCCCAGGGTGAGCAGATTTGAAGCGGGAGGGGAAGGCGGCGACAATA
TCTCGGGCGGCTTGGGTCAGCCGCCGGTTTGTGTGGGGAAGTGGGGGAGGTGGGCGATGACCGTGTCCCCTGCACGTGCG
GACGAGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis