Browse Element(s) Details


Os.11671.1.S1_at

Description gb:AK067366.1
DB_XREF= gi:32977384
TID=Os.11671.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106A17, full insert sequence.
FL= gb:AK105772.1 gb:AK067366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0239011/11S1 RNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02380NANA2+795066..796280photomorphogenesis repressor protein, putative
LOC_Os02g02390Os.11671.1.S1_at11/112+818981..824541S1 RNA binding domain containing protein, expressed
LOC_Os02g02400Os.9172.2.S1_x_at11/112+824969..827640Catalase isozyme A, putative, expressed
LOC_Os02g02400Os.9172.2.S1_at11/112+824969..827640Catalase isozyme A, putative, expressed
LOC_Os02g02400Os.9172.1.S1_x_at9/112+824969..827640Catalase isozyme A, putative, expressed
LOC_Os02g02410Os.1311.1.S1_at11/112+838738..842672Luminal binding protein 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11671.1.S1_at--1006--7711Chr02:823116..823140 (25 bp)
GGGTGGAGCTCTTGAACCTGCAGAA
LOC_Os02g02390
Os.11671.1.S1_at--330--2911Chr02:823859..823883 (25 bp)
AAGGACGATTCTTGCGAAGCCCAGG
LOC_Os02g02390
Os.11671.1.S1_at--820--3711Chr02:823885..824021 (25 bp)
CTAGCTCCAACCTTTCAGGTGTATA
LOC_Os02g02390
Os.11671.1.S1_at--957--3091Chr02:824043..824067 (25 bp)
AATATAAACTCCTTGCACGCTATGG
LOC_Os02g02390
Os.11671.1.S1_at--748--6191Chr02:824216..824240 (25 bp)
GAGGCAGTTTTAGCGTGCACAAACA
LOC_Os02g02390
Os.11671.1.S1_at--498--7171Chr02:824260..824284 (25 bp)
GTCTCCGTGCTGTAGTATTTTTCCT
LOC_Os02g02390
Os.11671.1.S1_at--723--7271Chr02:824330..824354 (25 bp)
GTCCAATTTTGCATCCTTGTAGCAT
LOC_Os02g02390
Os.11671.1.S1_at--829--6031Chr02:824361..824385 (25 bp)
GAGTCGTTTACACCTGATTTTCTTC
LOC_Os02g02390
Os.11671.1.S1_at--251--751Chr02:824413..824437 (25 bp)
ATGTAGTCCTAGCTCAACTTTGTAG
LOC_Os02g02390
Os.11671.1.S1_at--357--3031Chr02:824453..824477 (25 bp)
AATCGCCTTGATACGTTACTACGGA
LOC_Os02g02390
Os.11671.1.S1_at--1057--6511Chr02:824493..824517 (25 bp)
GATTTGCATCTTTCACGGTGCTAGA
LOC_Os02g02390
Target Sequence 
GGGTGGAGCTCTTGAACCTGCAGAAGCAGATTTTGAGTGGCCTGAAGTGGATGCTCTCATGGAAGAGATGAAAAATATTG
AGGAAGTTAGGGATGTTTATAAAGGACGATTCTTGCGAAGCCCAGGACTAGCTCCAACCTTTCAGGTGTATATGGCNCCT
TTGGTTGGTCAGAAATATAAACTCCTTGCACGCTATGGAAATAATGTCCAAGAGGTGATGGTGGAGACATCATTAGACAA
AGAACAGTTGAAAGAGGCAGTTTTAGCGTGCACAAACAGGGTGAGCTGATGATCAGCGTCTCCGTGCTGTAGTATTTTTC
CTTCTTTTAGCTTGCGAAGCAGATGGTTGTACAGAATTGTTGTGGCAGTCCAATTTTGCATCCTTGTAGCATGCTTTTGA
GTCGTTTACACCTGATTTTCTTCCTTTTCAAGTTGAAAATACCAGGTGATATGTAGTCCTAGCTCAACTTTGTAGAGGAT
GACAGGTGTAAATCGCCTTGATACGTTACTACGGAATTGCAACAGAATTCGATTTGCATCTTTCACGGTGCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis