Browse Element(s) Details


Os.9172.1.S1_x_at

Description gb:AK068433.1
DB_XREF= gi:32978451
TID=Os.9172.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9172 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for catalase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156D16, full insert sequence.
FL= gb:AK068433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g024009/11Catalase isozyme A, putative, expressed
LOC_Os02g238231/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02390Os.11671.1.S1_at11/112+818981..824541S1 RNA binding domain containing protein, expressed
LOC_Os02g02400Os.9172.2.S1_x_at11/112+824969..827640Catalase isozyme A, putative, expressed
LOC_Os02g02400Os.9172.2.S1_at11/112+824969..827640Catalase isozyme A, putative, expressed
LOC_Os02g02400Os.9172.1.S1_x_at9/112+824969..827640Catalase isozyme A, putative, expressed
LOC_Os02g02410Os.1311.1.S1_at11/112+838738..842672Luminal binding protein 3 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0042744biological_processhydrogen peroxide catabolism
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004096molecular_functioncatalase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9172.1.S1_x_at--471--3731Chr02:826171..826195 (25 bp)
CTACTCCGACGACAAGATGCTGCAG
LOC_Os02g02400
Os.9172.1.S1_x_at--859--8971Chr02:825816..826055 (25 bp)
TGAACTTCATGCACCAAGGTCTCCC
LOC_Os02g02400
Os.9172.1.S1_x_at--291--2531Chr02:825419..825792 (25 bp)
AACTACCTCTCCCAGTGTGATGAGT
LOC_Os02g02400
Os.9172.1.S1_x_at--817--4831Chr02:825369..825393 (25 bp)
GCTCAACGTGAAGCCAAGCATGTGA
LOC_Os02g02400
Os.9172.1.S1_x_at--1017--5251Chr02:825328..825352 (25 bp)
GAATGCATCATCTCTTGTTAATTAA
LOC_Os02g02400
Os.9172.1.S1_x_at--988--1291NONE
AGATGCACGCATCTTCTGTTGTCAT
NONE
Os.9172.1.S1_x_at--931--431Chr02:13760040..13760059 (20 bp)
ATCTTCTGTTGTCATTGGGCCATCT
LOC_Os02g23823
Os.9172.1.S1_x_at--864--8651Chr02:825241..825265 (25 bp)
TGGGCCATCTTTTGTATGCATCCTA
LOC_Os02g02400
Os.9172.1.S1_x_at--29--8551Chr02:825130..825154 (25 bp)
TGGAGCCTGCATATGTGTAACTTAA
LOC_Os02g02400
Os.9172.1.S1_x_at--1087--6991Chr02:825100..825124 (25 bp)
GTACTGGCGTATTAATGCCACTGCT
LOC_Os02g02400
Os.9172.1.S1_x_at--1083--4391Chr02:825084..825108 (25 bp)
GCCACTGCTGCATGTTGTAATACTC
LOC_Os02g02400
Target Sequence 
CTACTCCGACGACAAGATGCTGCAGTGCAGGGTGTTCGCGTACGCCGACACGCAGCGCTACAGGCTGGGGCCAAACTACC
TGATGCTGCCGGTGAACGCGCCCAAGTGCGCCCACCACAACAACCACTACGACGGCGCCATGAACTTCATGCACCAAGGT
CTCCCCTGAGCTCCGCGCCATCTGGGTCAACTACCTCTCCCAGTGTGATGAGTCGTTGGGGGTGAAGATTGCGAATAGGC
TCAACGTGAAGCCAAGCATGTGAAGAAACTAAGGCACAAGAATGCATCATCTCTTGTTAATTAATTGGAGTACTACCAAC
CAAATAAGGCCAGACAATGTCAGATGCACGCATCTTCTGTTGTCATTGGGCCATCTTTTGTATGCATCCTATTGTTAATT
ACTAGTACATGATATCCAAGTGATCATCAGCAAGGCTACAGAAATTCTGTAATACGATAAATTAAAAGAAACCAAAATGG
AGCCTGCATATGTGTAACTTAATTAATGTACTGGCGTATTAATGCCACTGCTGCATGTTGTAATACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9172.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis