Browse Element(s) Details


Os.9172.2.S1_x_at

Description gb:CB666433
DB_XREF= gi:29670158
DB_XREF=OSJNEd13F10.f
CLONE=OSJNEd13F10
TID=Os.9172.2
CNT=278
FEA=FLmRNA
TIER=Stack
STK=8
UG=Os.9172 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for catalase
FL= gb:AK071061.1 gb:AK061923.1 gb:AK099231.1 gb:AK065094.1 gb:AK099923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0240011/11Catalase isozyme A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02390Os.11671.1.S1_at11/112+818981..824541S1 RNA binding domain containing protein, expressed
LOC_Os02g02400Os.9172.2.S1_x_at11/112+824969..827640Catalase isozyme A, putative, expressed
LOC_Os02g02400Os.9172.2.S1_at11/112+824969..827640Catalase isozyme A, putative, expressed
LOC_Os02g02400Os.9172.1.S1_x_at9/112+824969..827640Catalase isozyme A, putative, expressed
LOC_Os02g02410Os.1311.1.S1_at11/112+838738..842672Luminal binding protein 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042744biological_processhydrogen peroxide catabolism
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0004096molecular_functioncatalase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9172.2.S1_x_at--686--651Chr02:826032..826056 (25 bp)
ATGAACTTCATGCACCGGGACGAGG
LOC_Os02g02400
Os.9172.2.S1_x_at--700--5291Chr02:825919..825943 (25 bp)
GAAGGCGACGATACACAAGCAGAAC
LOC_Os02g02400
Os.9172.2.S1_x_at--642--1411Chr02:825849..825873 (25 bp)
AGACAGGAGAGGTTCATCCGCCGCT
LOC_Os02g02400
Os.9172.2.S1_x_at--292--2531Chr02:825419..825792 (25 bp)
AACTACCTCTCCCAGTGTGATGAGT
LOC_Os02g02400
Os.9172.2.S1_x_at--1062--5331Chr02:825384..825408 (25 bp)
GAAGATTGCGAATAGGCTCAACGTG
LOC_Os02g02400
Os.9172.2.S1_x_at--816--4831Chr02:825369..825393 (25 bp)
GCTCAACGTGAAGCCAAGCATGTGA
LOC_Os02g02400
Os.9172.2.S1_x_at--1016--5251Chr02:825328..825352 (25 bp)
GAATGCATCATCTCTTGTTAATTAA
LOC_Os02g02400
Os.9172.2.S1_x_at--987--1291Chr02:825266..825290 (25 bp)
AGATGCACGCATCTTCTGTTGTCGT
LOC_Os02g02400
Os.9172.2.S1_x_at--932--431Chr02:825256..825280 (25 bp)
ATCTTCTGTTGTCGTTGGGCCATCT
LOC_Os02g02400
Os.9172.2.S1_x_at--863--8651Chr02:825241..825265 (25 bp)
TGGGCCATCTTTTGTATGCATCCTA
LOC_Os02g02400
Os.9172.2.S1_x_at--957--2851Chr02:825190..825214 (25 bp)
AAGTGATCATCAGCAAGGCTACAGA
LOC_Os02g02400
Target Sequence 
ATGAACTTCATGCACCGGGACGAGGAGGTGGACTACTACCCNATCGCGCCACGCGCCGCTCCGCCACGCGCCGCCGACGC
CCATCACGCCGCGCCCCGTGGTGGGGAGGAGGCAGAAGGCGACGATACACAAGCAGAACGACTTCAAGCAGCCCGGGGAG
AGGTACAGGTCGTGGGCGCCGGATAGACAGGAGAGGTTCATCCGCCGCTTCGCCGGCGAGCTCGCGCACCCCAAGGTCTC
CCCTGAGCTCCGCGCCATCTGGGTCAACTACCTCTCCCAGTGTGATGAGTCGTTGGGGGTGAAGATTGCGAATAGGCTCA
ACGTGAAGCCAAGCATGTGAAGAAACTAAGGCACAAGAATGCATCATCTCTTGTTAATTAATTGGAGTACTACCAACCAA
ATAAGGCCAGACAATGTCAGATGCACGCATCTTCTGTTGTCGTTGGGCCATCTTTTGTATGCATCCTATTGTTAATTACT
AGTACATGATATCCAAGTGATCATCAGCAAGGCTACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9172.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis