Browse Element(s) Details


Os.11683.1.S1_at

Description gb:AK058548.1
DB_XREF= gi:32968566
TID=Os.11683.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11683 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C06, full insert sequence.
FL= gb:AK058548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0336011/11DNA-binding bromodomain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03330OsAffx.29012.1.S1_at11/118+1537906..1539141hypothetical protein
LOC_Os08g03350Os.12048.1.S1_at11/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03350Os.56760.1.S1_at1/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03360Os.11683.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03360OsAffx.16806.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03370Os.53197.1.S1_at10/118+1571881..1573933Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os08g03380Os.11415.1.S1_at11/118+1574605..1578609DnaJ domain containing protein, expressed
LOC_Os08g03390Os.12068.1.S1_at11/118+1578786..1582657Step II splicing factor, putative, expressed
LOC_Os08g03400Os.55681.1.S1_x_at11/118+1582861..1583862expressed protein
LOC_Os08g03410Os.12816.1.S1_at11/118+1590894..1593201Cupin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11683.1.S1_at--596--7551Chr08:1561623..1561647 (25 bp)
GGGCGGATGCTTCTAACGTTTCCTG
LOC_Os08g03360
Os.11683.1.S1_at--1153--9791Chr08:1561610..1561634 (25 bp)
TAACGTTTCCTGTCTGCACAGAAAT
LOC_Os08g03360
Os.11683.1.S1_at--127--5471Chr08:1561581..1561605 (25 bp)
GAACTGCACTAATTTTGGGAGCCAA
LOC_Os08g03360
Os.11683.1.S1_at--338--7491Chr08:1561535..1561559 (25 bp)
GTGGGAAACTAGTCCATCATGCGTT
LOC_Os08g03360
Os.11683.1.S1_at--117--7271Chr08:1561524..1561548 (25 bp)
GTCCATCATGCGTTTCACTATCAAA
LOC_Os08g03360
Os.11683.1.S1_at--1149--1671Chr08:1561464..1561488 (25 bp)
AGCCATGAAGTGATGGTCGTCCGCA
LOC_Os08g03360
Os.11683.1.S1_at--928--811Chr08:1561452..1561476 (25 bp)
ATGGTCGTCCGCAAGTGCTTTTCTC
LOC_Os08g03360
Os.11683.1.S1_at--1092--10751Chr08:1561407..1561431 (25 bp)
TTGAGGGCGATGGTCTTTTTGATGA
LOC_Os08g03360
Os.11683.1.S1_at--781--7731Chr08:1561367..1561391 (25 bp)
GGTGGAGGTTCCATGGCTTCAACAC
LOC_Os08g03360
Os.11683.1.S1_at--267--3371Chr08:1561345..1561369 (25 bp)
CACCTTATGTGTGAGCCATTTTTGA
LOC_Os08g03360
Os.11683.1.S1_at--602--2511Chr08:1561244..1561268 (25 bp)
AACATTGTCCTGAGCTATCTTGTGC
LOC_Os08g03360
Target Sequence 
GGGCGGATGCTTCTAACGTTTCCTGTCTGCACAGAAATTTGTGAACTGCACTAATTTTGGGAGCCAAATGATAGGTTGGC
AAATGTGTGTGGGAAACTAGTCCATCATGCGTTTCACTATCAAATGAAGTGAAAGCTTTCTTGGAATGAGTTTATGGCCA
GCCATGAAGTGATGGTCGTCCGCAAGTGCTTTTCTCGATCAAAATAATGGGTTGTTTTGAGGGCGATGGTCTTTTTGATG
AGAGAGAGGGAGAGGGGGTGGAGGTTCCATGGCTTCAACACCTTATGTGTGAGCCATTTTTGAGATAGTCTTTTAGTGGC
ATTTGCTGTTGTGAATGTAATCTTGGAAACTGTACAAAAAGGATGACTGATAGATGGAAAACATTGTCCTGAGCTATCTT
GTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis