Browse Element(s) Details


OsAffx.29012.1.S1_at

Description tigr:9636.m00247
TID=OsAffx.29012.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0333011/11hypothetical protein
LOC_Os09g061401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03280OsAffx.29011.1.S1_at11/118+1514540..1515007hypothetical protein
LOC_Os08g03290Os.12168.2.S1_s_at11/118+1518951..1522883Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os08g03300Os.57114.1.S1_at11/118+1525654..1527089F-box domain containing protein, expressed
LOC_Os08g03310Os.23145.1.S1_at11/118+1530265..1534032Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g03320OsAffx.16805.1.S1_at11/118+1534448..1535987F-box domain containing protein, expressed
LOC_Os08g03330OsAffx.29012.1.S1_at11/118+1537906..1539141hypothetical protein
LOC_Os08g03350Os.12048.1.S1_at11/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03350Os.56760.1.S1_at1/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03360Os.11683.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03360OsAffx.16806.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29012.1.S1_at--664--3332Chr09:2875731..2876050 (25 bp)
CACTGTTCGACAAGGCGAGCGCCGT
LOC_Os09g06140
OsAffx.29012.1.S1_at--768--1911Chr08:1538367..1538391 (25 bp)
ACGGGCGACAAGTACCTGGTGGTCT
LOC_Os08g03330
OsAffx.29012.1.S1_at--965--3891Chr08:1538352..1538376 (25 bp)
CTGGTGGTCTGCGATGACGGCCATC
LOC_Os08g03330
OsAffx.29012.1.S1_at--428--2331Chr08:1538305..1538329 (25 bp)
AAAGATCTCCTATGGCAGTGGCGCC
LOC_Os08g03330
OsAffx.29012.1.S1_at--480--291Chr08:1538280..1538304 (25 bp)
ATAGCATCCGTTCTCAGGTACTACC
LOC_Os08g03330
OsAffx.29012.1.S1_at--48--8791Chr08:1538087..1538111 (25 bp)
TGTTCGACGTGGAGTCCGGCAAGTC
LOC_Os08g03330
OsAffx.29012.1.S1_at--1080--5171Chr08:1538069..1538093 (25 bp)
GCAAGTCGGCGACATGCTTTCCGGT
LOC_Os08g03330
OsAffx.29012.1.S1_at--1070--4871Chr08:1538054..1538078 (25 bp)
GCTTTCCGGTGGTCGACTTGGAGAC
LOC_Os08g03330
OsAffx.29012.1.S1_at--182--8191Chr08:1537996..1538020 (25 bp)
GGAAGCTCATAGAGCCCTCTGCTGG
LOC_Os08g03330
OsAffx.29012.1.S1_at--593--9131Chr08:1537977..1538001 (25 bp)
TGCTGGTTCTTCTTGGCTGATATGC
LOC_Os08g03330
OsAffx.29012.1.S1_at--1003--9931Chr08:1537936..1537960 (25 bp)
TACGAGAGTGGGAACGTCGGCTCAT
LOC_Os08g03330
Target Sequence 
CACTGTTCGACAAGGCGAGCGCCGTGTTCTACCCGGCGGCCGCGTTCGCGCCACCGCACAGCACGGGCGACAAGTACCTG
GTGGTCTGCGATGACGGCCATCTCTACCAGATCTGGATGGACGAAAAGATCTCCTATGGCAGTGGCGCCATAGCATCCGT
TCTCAGGTACTACCCTCGCCGCCGGCCGTGCTGGCTGCCGGCGAAGGATCTCGGCGGGCGCTCGTTCTTCGTCGGGGTGA
ACAACGCGGTGGCGCTGCGCGTGGATGGTGGCGGCGGCGGCGCGTCGGGGCTGAGAGGCAACTGCGTGTACTGGAGTGCC
AGGTGTAGTAGCCGGGCCAAGGTGTTCGACGTGGAGTCCGGCAAGTCGGCGACATGCTTTCCGGTGGTCGACTTGGAGAC
GGGCAAGTCGGCGCCGGGCTTTCCCGGCGGCGCGGAAGCTCATAGAGCCCTCTGCTGGTTCTTCTTGGCTGATATGCGTA
GCAGCAGCAGCAATACGAGAGTGGGAACGTCGGCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis