Browse Element(s) Details


OsAffx.16805.1.S1_at

Description tigr:9636.m00246
TID=OsAffx.16805.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0332011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03270OsAffx.29010.2.S1_at11/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.1.S1_x_at2/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.31678.3.S1_x_at1/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03280OsAffx.29011.1.S1_at11/118+1514540..1515007hypothetical protein
LOC_Os08g03290Os.12168.2.S1_s_at11/118+1518951..1522883Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os08g03300Os.57114.1.S1_at11/118+1525654..1527089F-box domain containing protein, expressed
LOC_Os08g03310Os.23145.1.S1_at11/118+1530265..1534032Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g03320OsAffx.16805.1.S1_at11/118+1534448..1535987F-box domain containing protein, expressed
LOC_Os08g03330OsAffx.29012.1.S1_at11/118+1537906..1539141hypothetical protein
LOC_Os08g03350Os.12048.1.S1_at11/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03350Os.56760.1.S1_at1/118+1555409..1560669lysine and histidine specific transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16805.1.S1_at--475--4011Chr08:1535308..1535332 (25 bp)
CGTCGCTGGTGCCACTGTTCGACAA
LOC_Os08g03320
OsAffx.16805.1.S1_at--255--4691Chr08:1535194..1535218 (25 bp)
GCGGCGACGGCCAACTCTACCAGAT
LOC_Os08g03320
OsAffx.16805.1.S1_at--894--4551Chr08:1535006..1535030 (25 bp)
GCGCCGAGAGCCAACTGCGTGTACT
LOC_Os08g03320
OsAffx.16805.1.S1_at--535--9131Chr08:1534991..1535015 (25 bp)
TGCGTGTACTGGACCGACGTCTGGA
LOC_Os08g03320
OsAffx.16805.1.S1_at--348--1851Chr08:1534975..1534999 (25 bp)
ACGTCTGGACCGATCGGGCCAAGGT
LOC_Os08g03320
OsAffx.16805.1.S1_at--395--5831Chr08:1534938..1534962 (25 bp)
GACCGGCGAGTCGACGTTGTGCTTT
LOC_Os08g03320
OsAffx.16805.1.S1_at--601--1151Chr08:1534930..1534954 (25 bp)
AGTCGACGTTGTGCTTTCCTGGCGC
LOC_Os08g03320
OsAffx.16805.1.S1_at--435--10651Chr08:1534548..1534939 (25 bp)
TTCCTGGCGCAGAAGTTTCATTTAA
LOC_Os08g03320
OsAffx.16805.1.S1_at--1099--1911Chr08:1534522..1534546 (25 bp)
ACGGGATATATTTTACAGTGCTTTA
LOC_Os08g03320
OsAffx.16805.1.S1_at--646--7291Chr08:1534505..1534529 (25 bp)
GTGCTTTAAAATTGTTTTCGACCAT
LOC_Os08g03320
OsAffx.16805.1.S1_at--40--6811Chr08:1534492..1534516 (25 bp)
GTTTTCGACCATCCAATTAATGTTG
LOC_Os08g03320
Target Sequence 
CGTCGCTGGTGCCACTGTTCGACAAGCCCGCCGCGACGTTCTACCCGGCGGCCGCGTTCGCGCCGCCGTACGACACGGTC
CGCACCTTCGCCGACTCCAAGAACCTGGCCGTCTGCGGCGACGGCCAACTCTACCAGATCTGGAGGGACGACGACGCGAA
CGCCACCATGTTCGTCCTCAGGTACCACCCTCGCCGCCGCCCGTGCTGGCTGCCGGCGAAGGACCTCGGCGGACACGCGG
TGTTCATCGGGAAGAACAACGCGGTGGCGCTGCGCGGGGACGACGGCGGCGGCGCGACGCCGGCGCCGAGAGCCAACTGC
GTGTACTGGACCGACGTCTGGACCGATCGGGCCAAGGTGTTCGACGTGGTGACCGGCGAGTCGACGTTGTGCTTTCCTGG
CGCAGAAGTTTCATTTAATACGGGATATATTTTACAGTGCTTTAAAATTGTTTTCGACCATCCAATTAATGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis