Browse Element(s) Details


OsAffx.29010.1.S1_x_at

Description tigr:9636.m00235
TID=OsAffx.29010.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0326011/11von Willebrand factor type A domain containing protein
LOC_Os08g032702/11von Willebrand factor type A domain containing protein
LOC_Os04g197001/11zinc finger family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03210OsAffx.20354.1.S1_at2/118+1484061..1486989retrotransposon protein, putative, unclassified
LOC_Os08g03220OsAffx.1646.1.S1_x_at1/118+1487320..1493442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03230OsAffx.29008.1.S1_at10/118+1494267..1495958hypothetical protein
LOC_Os08g03240Os.54803.1.S1_at2/118+1497700..1499939Protein kinase domain containing protein
LOC_Os08g03250NANA8+1502459..1502992hypothetical protein
LOC_Os08g03260OsAffx.29010.1.S1_x_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.29010.1.S1_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.31678.3.S1_x_at1/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.2.S1_at11/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.1.S1_x_at2/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.31678.3.S1_x_at1/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03280OsAffx.29011.1.S1_at11/118+1514540..1515007hypothetical protein
LOC_Os08g03290Os.12168.2.S1_s_at11/118+1518951..1522883Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os08g03300Os.57114.1.S1_at11/118+1525654..1527089F-box domain containing protein, expressed
LOC_Os08g03310Os.23145.1.S1_at11/118+1530265..1534032Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29010.1.S1_x_at--790--3613Chr08:1506059..1506083 (25 bp)
CTTGGTGTTCGTGGACGTGCCAGCA
LOC_Os08g03260
OsAffx.29010.1.S1_x_at--718--2892Chr08:1506117..1506141 (25 bp)
AAGGTGAGCTGCACATACCGCGACA
LOC_Os08g03260
OsAffx.29010.1.S1_x_at--354--1831Chr08:1506178..1506202 (25 bp)
ACGCCGTCGTGCAAAGGCCAGCGGA
LOC_Os08g03260
OsAffx.29010.1.S1_x_at--352--1052Chr08:1506202..1506226 (25 bp)
AGGTGAGCACCAGCACGGAGCCGTC
LOC_Os08g03260
OsAffx.29010.1.S1_x_at--961--7371Chr08:1506204..1506228 (25 bp)
GTGAGCACCAGCACGGAGCCGTCGA
LOC_Os08g03260
OsAffx.29010.1.S1_x_at--255--5091Chr08:1506208..1506232 (25 bp)
GCACCAGCACGGAGCCGTCGATGGA
LOC_Os08g03260
OsAffx.29010.1.S1_x_at--450--4671Chr08:1506239..1506263 (25 bp)
GCGGGAGCGCTTCTGCGTGGAGGCA
LOC_Os08g03260
OsAffx.29010.1.S1_x_at--1122--8391Chr08:1506555..1506579 (25 bp)
GGCGCCGTGCCATTTGGTTACTCGA
LOC_Os08g03260
OsAffx.29010.1.S1_x_at--82--4491Chr08:1506558..1506582 (25 bp)
GCCGTGCCATTTGGTTACTCGACGC
LOC_Os08g03260
OsAffx.29010.1.S1_x_at--954--7251Chr08:1506561..1506585 (25 bp)
GTGCCATTTGGTTACTCGACGCCGG
LOC_Os08g03260
OsAffx.29010.1.S1_x_at--372--3571Chr08:1506565..1506589 (25 bp)
CATTTGGTTACTCGACGCCGGCGAT
LOC_Os08g03260
Target Sequence 
CTTGGTGTTCGTGGACGTGCCAGCAGCCGGCNCCGNNGAAGACGNCACANAACTGATCAAGGTGAGCTGCACATACCGCG
ACACCGCGAGTCGGCAGCAGATGGTCGTCGCCGGCGAGGACGCCGTCGTGCAAAGGCCAGCGGAGGTGAGCACCAGCACG
GAGCCGTCGATGGAGGTGGAGCGGGAGCGCTTCTGCGTGGAGGCAACCGAAGACATCGCGGCGGCGCGGGAAGCCGCCGA
GCGCGGCGCGTACGCGGCAGCGAAGGCGATACTCGACCGCCGGCAGGAGGCGCTCGCCCGGTCGGCGCGGCGGCTCGCCG
GCGACGCCAGGTGCGCGGCGCTGGTGTCGGAGCTGCGCGAGCTGAGCGCCCGCGTGGCGAACAGGCGGGAGTACGAGCAG
ACCGGGCGCGCGTGCATGCTCGCCGGCATGAGCTCGCACGCACAGCAGCGCGCCACGTCGGTGCAGCTGTTCTCGCCGGC
GTCGGCGCTTTCCTCCGGCGCCGTGCCATTTGGTTACTCGACGCCGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29010.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis