Browse Element(s) Details


OsAffx.29008.1.S1_at

Description tigr:9636.m00232
TID=OsAffx.29008.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0323010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03200OsAffx.29006.1.S1_at1/118+1471193..1478565retrotransposon protein, putative, unclassified
LOC_Os08g03210OsAffx.20354.1.S1_at2/118+1484061..1486989retrotransposon protein, putative, unclassified
LOC_Os08g03220OsAffx.1646.1.S1_x_at1/118+1487320..1493442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03230OsAffx.29008.1.S1_at10/118+1494267..1495958hypothetical protein
LOC_Os08g03240Os.54803.1.S1_at2/118+1497700..1499939Protein kinase domain containing protein
LOC_Os08g03250NANA8+1502459..1502992hypothetical protein
LOC_Os08g03260OsAffx.29010.1.S1_x_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.29010.1.S1_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.31678.3.S1_x_at1/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.2.S1_at11/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.1.S1_x_at2/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.31678.3.S1_x_at1/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03280OsAffx.29011.1.S1_at11/118+1514540..1515007hypothetical protein
LOC_Os08g03290Os.12168.2.S1_s_at11/118+1518951..1522883Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29008.1.S1_at--123--1611Chr08:1494302..1494326 (25 bp)
AGCTGCAGGGACATCTAGCGGCGAT
LOC_Os08g03230
OsAffx.29008.1.S1_at--743--1271Chr08:1494342..1494366 (25 bp)
AGATCCGGCGCTCAGGACCTCAGTG
LOC_Os08g03230
OsAffx.29008.1.S1_at--515--4831Chr08:1494351..1494375 (25 bp)
GCTCAGGACCTCAGTGGTGATGACA
LOC_Os08g03230
OsAffx.29008.1.S1_at--249--8571Chr08:1494383..1494407 (25 bp)
TGGATCCGGCGCTCAGGAGCTCGTC
LOC_Os08g03230
OsAffx.29008.1.S1_at--549--971Chr08:1494397..1494421 (25 bp)
AGGAGCTCGTCAACGGCAGCGTCAG
LOC_Os08g03230
OsAffx.29008.1.S1_at--373--2571Chr08:1494408..1494432 (25 bp)
AACGGCAGCGTCAGGCTCAGAAGTT
LOC_Os08g03230
OsAffx.29008.1.S1_at--558--871Chr08:1494456..1494479 (24 bp)
ATGGCGCCGGTAGCGAAGATCACGC
LOC_Os08g03230
OsAffx.29008.1.S1_at--555--2811NONE
AAGATCACGCACTTCGCGCCGGCGG
NONE
OsAffx.29008.1.S1_at--776--7571Chr08:1495858..1495882 (25 bp)
GGGCTGATTCTCTGATGGTGCTGCA
LOC_Os08g03230
OsAffx.29008.1.S1_at--764--6571Chr08:1495863..1495887 (25 bp)
GATTCTCTGATGGTGCTGCACAGCG
LOC_Os08g03230
OsAffx.29008.1.S1_at--658--8532Chr08:1495894..1495918 (25 bp)
TGGACGCTAGGCTGCGACAGTGCAT
LOC_Os08g03230
Target Sequence 
AGCTGCAGGGACATCTAGCGGCGATGACGACGGCAGAGGCAGATCCGGCGCTCAGGACCTCAGTGGTGATGACAAGGACA
GTGGATCCGGCGCTCAGGAGCTCGTCAACGGCAGCGTCAGGCTCAGAAGTTGCGGGGCTTTGGTGGCGACGGCAATGGCG
CCGGTAGCGAAGATCACGCACTTCGCGCCGGCGGCGAGGGCTGATTCTCTGATGGTGCTGCACAGCGCGGCGGTGGACGC
TAGGCTGCGACAGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis