Browse Element(s) Details


Os.12168.2.S1_s_at

Description gb:AK105038.1
DB_XREF= gi:32990247
TID=Os.12168.2
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12168 (NCBI UniGene Cluster)
UG_TITLE=Clone glyceraldehyde-3-phosphate dehydrogenase (Gpc) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C12, full insert sequence.
FL= gb:AK105038.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0329011/11Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03230OsAffx.29008.1.S1_at10/118+1494267..1495958hypothetical protein
LOC_Os08g03240Os.54803.1.S1_at2/118+1497700..1499939Protein kinase domain containing protein
LOC_Os08g03250NANA8+1502459..1502992hypothetical protein
LOC_Os08g03260OsAffx.29010.1.S1_x_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.29010.1.S1_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.31678.3.S1_x_at1/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.2.S1_at11/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.1.S1_x_at2/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.31678.3.S1_x_at1/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03280OsAffx.29011.1.S1_at11/118+1514540..1515007hypothetical protein
LOC_Os08g03290Os.12168.2.S1_s_at11/118+1518951..1522883Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os08g03300Os.57114.1.S1_at11/118+1525654..1527089F-box domain containing protein, expressed
LOC_Os08g03310Os.23145.1.S1_at11/118+1530265..1534032Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g03320OsAffx.16805.1.S1_at11/118+1534448..1535987F-box domain containing protein, expressed
LOC_Os08g03330OsAffx.29012.1.S1_at11/118+1537906..1539141hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006950biological_processresponse to stress
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0008886molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0008943molecular_functionglyceraldehyde-3-phosphate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12168.2.S1_s_at--381--2791Chr08:1521737..1521990 (25 bp)
AAGAGTGCTATCAAGTCTGCATCAG
LOC_Os08g03290
Os.12168.2.S1_s_at--1122--8171Chr08:1522025..1522049 (25 bp)
GGAAGACCTGGTTTCTACTGACTTT
LOC_Os08g03290
Os.12168.2.S1_s_at--763--6831Chr08:1522035..1522059 (25 bp)
GTTTCTACTGACTTTGTTGGTGACA
LOC_Os08g03290
Os.12168.2.S1_s_at--402--8611Chr08:1522052..1522203 (25 bp)
TGGTGACAGCAGGTCGAGCATCTTC
LOC_Os08g03290
Os.12168.2.S1_s_at--220--5931Chr08:1522194..1522218 (25 bp)
GAGCATCTTCGACGCCAAGGCTGGA
LOC_Os08g03290
Os.12168.2.S1_s_at--932--871Chr08:1522211..1522235 (25 bp)
AGGCTGGAATTGCTCTTAACGATAA
LOC_Os08g03290
Os.12168.2.S1_s_at--90--9811Chr08:1522233..1522257 (25 bp)
TAACTTTGTCAAGCTTGTCGCCTGG
LOC_Os08g03290
Os.12168.2.S1_s_at--24--6771Chr08:1522372..1522392 (21 bp)
GTTACAGCAACCGTGTCATCGACCT
LOC_Os08g03290
Os.12168.2.S1_s_at--537--5831Chr08:1522388..1522412 (25 bp)
GACCTGATCCGCCACATGGCCAAGA
LOC_Os08g03290
Os.12168.2.S1_s_at--248--8431Chr08:1522405..1522429 (25 bp)
GGCCAAGACCCAGTAGAATCCTTTT
LOC_Os08g03290
Os.12168.2.S1_s_at--670--311Chr08:1522465..1522489 (25 bp)
ATACCGGTATGCTTTGTCTATGCTG
LOC_Os08g03290
Target Sequence 
AAGAGTGCTATCAAGTCTGCATCAGAGGGAAAGCTCAAGGGAATCATAGGATATGTTGAGGAAGACCTGGTTTCTACTGA
CTTTGTTGGTGACAGCAGGTCGAGCATCTTCGACGCCAAGGCTGGAATTGCTCTTAACGATAACTTTGTCAAGCTTGTCG
CCTGGTACGACAACGAGTGGGGTTACAGCAACCGTGTCATCGACCTGATCCGCCACATGGCCAAGACCCAGTAGAATCCT
TTTGCTTGCCATGGTATTCCNATGGCCGCCGAGCCGGAGATACCGGTATGCTTTGTCTATGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12168.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis