Browse Element(s) Details


Os.57114.1.S1_at

Description gb:AK110941.1
DB_XREF= gi:32996150
TID=Os.57114.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-G11, full insert sequence.
FL= gb:AK110941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0330011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03250NANA8+1502459..1502992hypothetical protein
LOC_Os08g03260OsAffx.29010.1.S1_x_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.29010.1.S1_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.31678.3.S1_x_at1/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.2.S1_at11/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.1.S1_x_at2/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.31678.3.S1_x_at1/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03280OsAffx.29011.1.S1_at11/118+1514540..1515007hypothetical protein
LOC_Os08g03290Os.12168.2.S1_s_at11/118+1518951..1522883Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os08g03300Os.57114.1.S1_at11/118+1525654..1527089F-box domain containing protein, expressed
LOC_Os08g03310Os.23145.1.S1_at11/118+1530265..1534032Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g03320OsAffx.16805.1.S1_at11/118+1534448..1535987F-box domain containing protein, expressed
LOC_Os08g03330OsAffx.29012.1.S1_at11/118+1537906..1539141hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57114.1.S1_at--218--6091Chr08:1526192..1526216 (25 bp)
GAGTACCGCGTGGAGTACAACCAGA
LOC_Os08g03300
Os.57114.1.S1_at--460--6271Chr08:1526169..1526193 (25 bp)
GATGTTCGTTCTGAGATACCACCCT
LOC_Os08g03300
Os.57114.1.S1_at--739--3831Chr08:1526013..1526037 (25 bp)
CTGCGTGTACTGGACTGACATCTGT
LOC_Os08g03300
Os.57114.1.S1_at--167--3391Chr08:1525987..1526011 (25 bp)
CAGCTCGGGCCAAGGTATTCGACAT
LOC_Os08g03300
Os.57114.1.S1_at--970--5171Chr08:1525954..1525978 (25 bp)
GCAAGTCGACGCTGTGCTTTCATGG
LOC_Os08g03300
Os.57114.1.S1_at--1155--10531Chr08:1525936..1525960 (25 bp)
TTCATGGCGTAGAAGACCACCGCGC
LOC_Os08g03300
Os.57114.1.S1_at--366--3911Chr08:1525905..1525929 (25 bp)
CTGGTACTTCTTGGCGTAGCAGCAG
LOC_Os08g03300
Os.57114.1.S1_at--606--5411Chr08:1525877..1525901 (25 bp)
GAAGCCCAACTCTAGGTTCAGCTTG
LOC_Os08g03300
Os.57114.1.S1_at--600--1551Chr08:1525858..1525882 (25 bp)
AGCTTGTCAGCTTCCGGAATCGGAT
LOC_Os08g03300
Os.57114.1.S1_at--906--1451Chr08:1525767..1525791 (25 bp)
AGAAGTTTTGGCTGTCTTCGTTGCT
LOC_Os08g03300
Os.57114.1.S1_at--467--10631Chr08:1525751..1525775 (25 bp)
TTCGTTGCTGTCATTCCGATGGTAA
LOC_Os08g03300
Target Sequence 
GAGTACCGCGTGGAGTACAACCAGATGTTCGTTCTGAGATACCACCCTCGCCGCCGGCCGTGCTGGGTGCCAGTGGAGGA
TCTCGGCGGACGCTCGGTGTTCGTCGGGAAGAACAATTCGGTGGCGCTGCGCGTGGACGGCGGCGGCGGCGGCGGCGGCG
TGCCGGGGCTGAGAGCTAACTGCGTGTACTGGACTGACATCTGTCCAGCTCGGGCCAAGGTATTCGACATGGTTTCCGGC
AAGTCGACGCTGTGCTTTCATGGCGTAGAAGACCACCGCGCCATCTGCTGGTACTTCTTGGCGTAGCAGCAGCAAGAAGC
CCAACTCTAGGTTCAGCTTGTCAGCTTCCGGAATCGGATTGAGAAAGTTTGATTGAATTGGTTATGTGGTATTGGAAGTT
TAGGCTGAATTCTGTGATAAGAGACAGAAGTTTTGGCTGTCTTCGTTGCTGTCATTCCGATGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis