Browse Element(s) Details


Os.23145.1.S1_at

Description gb:AK111805.1
DB_XREF= gi:37988468
TID=Os.23145.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.23145 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094C18, full insert sequence.
FL= gb:AK111902.1 gb:AK111805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0331011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03260OsAffx.29010.1.S1_x_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.29010.1.S1_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.31678.3.S1_x_at1/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.2.S1_at11/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.1.S1_x_at2/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.31678.3.S1_x_at1/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03280OsAffx.29011.1.S1_at11/118+1514540..1515007hypothetical protein
LOC_Os08g03290Os.12168.2.S1_s_at11/118+1518951..1522883Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os08g03300Os.57114.1.S1_at11/118+1525654..1527089F-box domain containing protein, expressed
LOC_Os08g03310Os.23145.1.S1_at11/118+1530265..1534032Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g03320OsAffx.16805.1.S1_at11/118+1534448..1535987F-box domain containing protein, expressed
LOC_Os08g03330OsAffx.29012.1.S1_at11/118+1537906..1539141hypothetical protein
LOC_Os08g03350Os.12048.1.S1_at11/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03350Os.56760.1.S1_at1/118+1555409..1560669lysine and histidine specific transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23145.1.S1_at--86--9631Chr08:1533347..1533371 (25 bp)
TCAGGTGCCCCTTTAGGCATTTGAT
LOC_Os08g03310
Os.23145.1.S1_at--55--10151Chr08:1533399..1533423 (25 bp)
TATACACACACAGGAGGAGACAACA
LOC_Os08g03310
Os.23145.1.S1_at--655--5511Chr08:1533468..1533492 (25 bp)
GAAAATCTCACTGGTCATAATTAGG
LOC_Os08g03310
Os.23145.1.S1_at--162--151Chr08:1533487..1533511 (25 bp)
ATTAGGAGGCACATCTTTTTTGAAA
LOC_Os08g03310
Os.23145.1.S1_at--795--8011Chr08:1533523..1533547 (25 bp)
GGAGGCACATAAACACATGGTGTTC
LOC_Os08g03310
Os.23145.1.S1_at--338--9531Chr08:1533593..1533617 (25 bp)
TCTCACATGGTGCAGTAGCTAGCTT
LOC_Os08g03310
Os.23145.1.S1_at--957--7391Chr08:1533711..1533735 (25 bp)
GTGATATGCTAATTATACTGTCCTA
LOC_Os08g03310
Os.23145.1.S1_at--387--10391Chr08:1533783..1533807 (25 bp)
TTAGGGTATAATGGCCTACTGGCCT
LOC_Os08g03310
Os.23145.1.S1_at--633--4271Chr08:1533796..1533820 (25 bp)
GCCTACTGGCCTTTACCTTTACAAG
LOC_Os08g03310
Os.23145.1.S1_at--372--5051Chr08:1533835..1533859 (25 bp)
GCAGAACCTTTGCTGATATTCCTAT
LOC_Os08g03310
Os.23145.1.S1_at--242--4751Chr08:1533846..1533870 (25 bp)
GCTGATATTCCTATTGACAAGATGA
LOC_Os08g03310
Target Sequence 
TCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAA
AGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTT
TGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACA
AAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAG
ATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTANAATAAGGCAT
GTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAA
AAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis