Browse Element(s) Details


Os.11686.1.S1_at

Description gb:AK068416.1
DB_XREF= gi:32978434
TID=Os.11686.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1743A09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154C20, full insert sequence.
FL= gb:AK068416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1230011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12260Os.26879.1.S1_at11/113+6422568..6424588Cytochrome P450 family protein, expressed
LOC_Os03g12270Os.45954.1.S1_at11/113+6432197..6434699mannitol dehydrogenase, putative, expressed
LOC_Os03g12280NANA3+6435583..6436190hypothetical protein
LOC_Os03g12290Os.12728.1.S1_at11/113+6437026..6441842Glutamine synthetase root isozyme 5, putative, expressed
LOC_Os03g12300Os.11686.2.S1_x_at11/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.11686.1.S1_at11/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.52150.1.S1_at2/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.52150.1.S1_x_at1/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12310OsAffx.20517.1.S1_at11/113+6459539..6466629retrotransposon protein, putative, unclassified
LOC_Os03g12310OsAffx.20517.2.S1_x_at7/113+6459539..6466629retrotransposon protein, putative, unclassified
LOC_Os03g12320Os.38092.1.S1_at11/113+6473023..6478089UDP-3-0-acyl N-acetylglucosamine deacetylase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11686.1.S1_at--746--1391Chr03:6447834..6447858 (25 bp)
AGACGCATCGTCACAAATTTGTTGG
LOC_Os03g12300
Os.11686.1.S1_at--784--6851Chr03:6447740..6447764 (25 bp)
GTTTGGTTCCTAGATTTTTGTCATG
LOC_Os03g12300
Os.11686.1.S1_at--686--8811Chr03:6447701..6447725 (25 bp)
TGTTGGAGAAAGCTCGTTTCCCTCT
LOC_Os03g12300
Os.11686.1.S1_at--950--9391Chr03:6447688..6447712 (25 bp)
TCGTTTCCCTCTTTCAGCTATTATT
LOC_Os03g12300
Os.11686.1.S1_at--777--9311Chr03:6447662..6447686 (25 bp)
TCCCTTTTCTTTTAGCTGTTTCACT
LOC_Os03g12300
Os.11686.1.S1_at--839--9991Chr03:6447650..6447674 (25 bp)
TAGCTGTTTCACTGCTCATGTGGTT
LOC_Os03g12300
Os.11686.1.S1_at--92--1991Chr03:6447640..6447664 (25 bp)
ACTGCTCATGTGGTTTCTGTAATTT
LOC_Os03g12300
Os.11686.1.S1_at--252--6051Chr03:6447581..6447605 (25 bp)
GAGATATGTCACGACTGTTCTGCTT
LOC_Os03g12300
Os.11686.1.S1_at--818--3871Chr03:6447567..6447591 (25 bp)
CTGTTCTGCTTATCAATCTCCAATA
LOC_Os03g12300
Os.11686.1.S1_at--783--7031Chr03:6447527..6447551 (25 bp)
GTAAATTTTTGTTCCTAGCTCTTGT
LOC_Os03g12300
Os.11686.1.S1_at--228--6371Chr03:6447502..6447526 (25 bp)
GATCCACGCCATCTGTAATTTTCTA
LOC_Os03g12300
Target Sequence 
AGACGCATCGTCACAAATTTGTTGGGGCTTTGGTTAGTCTCCTTTATTTTTTTTTCAAAGGAGGTTCATAGGGTACATAG
AGTGTAATCTTTTTGTTTGGTTCCTAGATTTTTGTCATGGGATGGCAATTATTTGTTGGAGAAAGCTCGTTTCCCTCTTT
CAGCTATTATTTTCCCTTTTCTTTTAGCTGTTTCACTGCTCATGTGGTTTCTGTAATTTTTCAATTGAAGGCCAATGAGC
AAAATAGTATTTGGAGATATGTCACGACTGTTCTGCTTATCAATCTCCAATAAATTAGTGATGCAATGTAAATTTTTGTT
CCTAGCTCTTGTGATCCACGCCATCTGTAATTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis