Browse Element(s) Details

Os.11713.2.S1_x_at

Description

gb:AK063880.1
DB_XREF= gi:32973898
TID=Os.11713.2
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-F07, full insert sequence.
FL= gb:AK063880.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04640	11/11	DNA-binding bromodomain-containing protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04590	OsAffx.27456.1.S1_at	3/11	6	+	1999174..1999570	Auxin responsive protein, expressed
LOC_Os06g04600	Os.15940.1.S1_at	11/11	6	+	1999873..2008069	Brix domain containing protein, expressed
LOC_Os06g04600	Os.15940.2.S1_at	6/11	6	+	1999873..2008069	Brix domain containing protein, expressed
LOC_Os06g04610	Os.5449.1.S2_at	11/11	6	+	2008997..2014660	ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04610	Os.5449.1.S1_at	11/11	6	+	2008997..2014660	ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04620	Os.49218.1.S1_at	11/11	6	+	2016779..2018352	GDP-mannose 4,6 dehydratase 1, putative, expressed
LOC_Os06g04630	OsAffx.15264.1.S1_at	11/11	6	+	2020817..2021420	hypothetical protein
LOC_Os06g04640	Os.11713.2.S1_x_at	11/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04640	Os.11713.2.S1_at	11/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04640	Os.11713.1.S1_x_at	5/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04650	Os.6734.1.S1_at	11/11	6	+	2027123..2029229	Peptide methionine sulfoxide reductase family protein, expressed
LOC_Os06g04660	Os.11678.1.S1_at	11/11	6	+	2029470..2033811	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g04660	Os.11678.2.S1_at	9/11	6	+	2029470..2033811	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g04670	OsAffx.27457.1.S1_at	11/11	6	+	2035772..2036779	CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04670	OsAffx.27457.1.S1_x_at	11/11	6	+	2035772..2036779	CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04680	Os.49667.1.S1_at	10/11	6	+	2038752..2040428	expressed protein
LOC_Os06g04690	Os.3577.2.S1_at	11/11	6	+	2042458..2047358	F-box domain containing protein, expressed
LOC_Os06g04690	Os.3577.1.S1_x_at	9/11	6	+	2042458..2047358	F-box domain containing protein, expressed
LOC_Os06g04699	Os.7474.1.S1_at	11/11	6	+	2049319..2050708	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006338	biological_process	chromatin remodeling
GO:0010030	biological_process	positive regulation of seed germination
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0004406	molecular_function	H3/H4 histone acetyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11713.2.S1_x_at--775--219	1	Chr06:2026450..2026474 (25 bp)	ACAAGACAACCCTAGCTTCGAAGCT	LOC_Os06g04640
Os.11713.2.S1_x_at--560--257	1	Chr06:2026659..2026683 (25 bp)	AACGTCGCTTCTGGCAGGACTGATG	LOC_Os06g04640
Os.11713.2.S1_x_at--888--649	1	Chr06:2026706..2026730 (25 bp)	GATATGCAATGCTCTGGCCAGAACT	LOC_Os06g04640
Os.11713.2.S1_x_at--97--517	1	Chr06:2026751..2026775 (25 bp)	GCAACCTAATTAGTGGCCTCTGACC	LOC_Os06g04640
Os.11713.2.S1_x_at--1114--445	1	Chr06:2026766..2026790 (25 bp)	GCCTCTGACCATTGTGCATTTGTGT	LOC_Os06g04640
Os.11713.2.S1_x_at--731--975	1	Chr06:2026836..2026860 (25 bp)	TAATCTCTTCCTTCTATGGAGCATG	LOC_Os06g04640
Os.11713.2.S1_x_at--231--35	1	Chr06:2026864..2026888 (25 bp)	ATAACTAGTCTCTGCTTAGCTGTGT	LOC_Os06g04640
Os.11713.2.S1_x_at--508--1011	1	Chr06:2026931..2026955 (25 bp)	TATGTTCCACCTGTAGATTGTGTGT	LOC_Os06g04640
Os.11713.2.S1_x_at--734--741	1	Chr06:2026952..2026976 (25 bp)	GTGTTCCATGCAATTGTACCATCAA	LOC_Os06g04640
Os.11713.2.S1_x_at--582--845	1	Chr06:2026999..2027023 (25 bp)	TGGCGCCATTTCACTGTGGCCATTA	LOC_Os06g04640
Os.11713.2.S1_x_at--1146--13	1	Chr06:2027020..2027044 (25 bp)	ATTAGCCCATTACTCATTCCGAAGA	LOC_Os06g04640

Target Sequence

ACAAGACAACCCTAGCTTCGAAGCTAAAGGAGACGAACTGGAACTTGATATGGATGCTCAGAGTGAGACAACCCTCTGGA
GGTTGAAATTCTTTGTGAGGGAAGCATTGGAACGACAGGCCAACGTCGCTTCTGGCAGGACTGATGAAAATGCGAAAAGA
AAGAGGGAGATATGCAATGCTCTGGCCAGAACTGCTTCAAAAAGAGTCAAGCAGCAACCTAATTAGTGGCCTCTGACCAT
TGTGCATTTGTGTCTTCACTTGTTGTTTAGAATGTTTCTGAGAAATAGCCTTGCAAAATAATCTCTTCCTTCTATGGAGC
ATGTAAATAACTAGTCTCTGCTTAGCTGTGTGAGGTTGCAACAATAGCGAAATGTTTCCCAAAAAAAGGGTCTTATGTTC
CACCTGTAGATTGTGTGTTCCATGCAATTGTACCATCAAGAAAAATCTAGTATAGCGTTGNTGGCGCCATTTCACTGTGG
CCATTAGCCCATTACTCATTCCGAAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis