Browse Element(s) Details

Os.6734.1.S1_at

Description

gb:AK069328.1
DB_XREF= gi:32979352
TID=Os.6734.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012A19, full insert sequence.
FL= gb:AK069328.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04650	11/11	Peptide methionine sulfoxide reductase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04600	Os.15940.1.S1_at	11/11	6	+	1999873..2008069	Brix domain containing protein, expressed
LOC_Os06g04600	Os.15940.2.S1_at	6/11	6	+	1999873..2008069	Brix domain containing protein, expressed
LOC_Os06g04610	Os.5449.1.S2_at	11/11	6	+	2008997..2014660	ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04610	Os.5449.1.S1_at	11/11	6	+	2008997..2014660	ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04620	Os.49218.1.S1_at	11/11	6	+	2016779..2018352	GDP-mannose 4,6 dehydratase 1, putative, expressed
LOC_Os06g04630	OsAffx.15264.1.S1_at	11/11	6	+	2020817..2021420	hypothetical protein
LOC_Os06g04640	Os.11713.2.S1_x_at	11/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04640	Os.11713.2.S1_at	11/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04640	Os.11713.1.S1_x_at	5/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04650	Os.6734.1.S1_at	11/11	6	+	2027123..2029229	Peptide methionine sulfoxide reductase family protein, expressed
LOC_Os06g04660	Os.11678.1.S1_at	11/11	6	+	2029470..2033811	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g04660	Os.11678.2.S1_at	9/11	6	+	2029470..2033811	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g04670	OsAffx.27457.1.S1_at	11/11	6	+	2035772..2036779	CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04670	OsAffx.27457.1.S1_x_at	11/11	6	+	2035772..2036779	CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04680	Os.49667.1.S1_at	10/11	6	+	2038752..2040428	expressed protein
LOC_Os06g04690	Os.3577.2.S1_at	11/11	6	+	2042458..2047358	F-box domain containing protein, expressed
LOC_Os06g04690	Os.3577.1.S1_x_at	9/11	6	+	2042458..2047358	F-box domain containing protein, expressed
LOC_Os06g04699	Os.7474.1.S1_at	11/11	6	+	2049319..2050708	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006464	biological_process	protein modification
GO:0008113	molecular_function	protein-methionine-S-oxide reductase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.6734.1.S1_at--1023--891	1	Chr06:2027626..2027650 (25 bp)	TGAGCTGAAGCGCAAGCCGTTTCTC	LOC_Os06g04650
Os.6734.1.S1_at--165--267	1	Chr06:2027613..2027637 (25 bp)	AAGCCGTTTCTCCTGCAACTGATTG	LOC_Os06g04650
Os.6734.1.S1_at--28--257	1	Chr06:2027597..2027621 (25 bp)	AACTGATTGGGAACCTGCCCGAGGA	LOC_Os06g04650
Os.6734.1.S1_at--806--385	1	Chr06:2027565..2027589 (25 bp)	CTGACCTCAACACTAGCTGCAAAGT	LOC_Os06g04650
Os.6734.1.S1_at--134--17	1	Chr06:2027381..2027405 (25 bp)	ATTTTGCCGCAAATCTTGTCCAGAT	LOC_Os06g04650
Os.6734.1.S1_at--628--573	1	Chr06:2027356..2027380 (25 bp)	GACTGGTTGTGGTCATTCCTTGGTC	LOC_Os06g04650
Os.6734.1.S1_at--1005--1067	1	Chr06:2027341..2027365 (25 bp)	TTCCTTGGTCGCAGCAATCACTAAT	LOC_Os06g04650
Os.6734.1.S1_at--1099--967	1	Chr06:2027324..2027348 (25 bp)	TCACTAATTAGCGTTCATGTCCTCC	LOC_Os06g04650
Os.6734.1.S1_at--1064--499	1	Chr06:2027266..2027290 (25 bp)	GCATGTATATCCAAACTTTCGAGTT	LOC_Os06g04650
Os.6734.1.S1_at--534--1083	1	Chr06:2027243..2027267 (25 bp)	TTGTGTGATGTGACCTGAAATCCTG	LOC_Os06g04650
Os.6734.1.S1_at--241--1079	1	Chr06:2027175..2027199 (25 bp)	TTGTTACTCTGGCTCTTTTATGTGT	LOC_Os06g04650

Target Sequence

TGAGCTGAAGCGCAAGCCGTTTCTCCTGCAACTGATTGGGAACCTGCCCGAGGAGGAGCTCCTGACCTCAACACTAGCTG
CAAAGTTGAATGCATACGCTGCTGAGCTCTGCTCCCCAAATACCCAGAACAGAATAAACTCCAAGATTGATGAGATTGCT
AAGAAAGGATGGCCCATCCTAAGAGACATTTAGCTCGGTGTTCCTGGGTTTTACATATTAATATATCATTATCCAATTGT
GCATGATTTTGCCGCAAATCTTGTCCAGATGACTGGTTGTGGTCATTCCTTGGTCGCAGCAATCACTAATTAGCGTTCAT
GTCCTCCTCTGCTCATTTTGAGATCTCTCTAATAGAATCTGCATGTATATCCAAACTTTCGAGTTGTGTGATGTGACCTG
AAATCCTGAATTTATGATTGGTTCTTACAGAACAGGTGCCGAAATTGTATATTGTTACTCTGGCTCTTTTATGTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis