Browse Element(s) Details


Os.11720.1.S1_a_at

Description gb:AK104869.1
DB_XREF= gi:32990078
TID=Os.11720.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11720 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1040D09.13 (B1040D09.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B01, full insert sequence.
FL= gb:AK104869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4317011/11Polypyrimidine tract-binding protein homolog 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43140Os.41251.1.A1_at6/111+24938537..24942334Lipase family protein, expressed
LOC_Os01g43150Os.51057.1.S1_s_at11/111+24942951..24950000ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43150Os.51057.1.S1_at10/111+24942951..24950000ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43160Os.15014.1.S1_at11/111+24956118..24959175glycoside hydrolase family 28 protein, putative, expressed
LOC_Os01g43170Os.11720.1.S1_a_at11/111+24960613..24966124Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os01g43180OsAffx.11453.1.S1_at11/111+24970072..24971066Myb-like DNA-binding domain containing protein
LOC_Os01g43180Os.37184.1.S1_at2/111+24970072..24971066Myb-like DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11720.1.S1_a_at--544--191Chr01:24961198..24961222 (25 bp)
ATTTCCAGGCTATGGATCTCCACAG
LOC_Os01g43170
Os.11720.1.S1_a_at--749--9051Chr01:24961145..24961169 (25 bp)
TGCATCAACAACATCCAGTCCAGGG
LOC_Os01g43170
Os.11720.1.S1_a_at--819--991Chr01:24961078..24961102 (25 bp)
AGGATCGTTCATGCAGTACCCTGGC
LOC_Os01g43170
Os.11720.1.S1_a_at--932--1911Chr01:24961052..24961076 (25 bp)
ACGGAGGCCGTCCAGTTCAAGACGC
LOC_Os01g43170
Os.11720.1.S1_a_at--665--10511Chr01:24961037..24961061 (25 bp)
TTCAAGACGCACCTGGGCAACAAGC
LOC_Os01g43170
Os.11720.1.S1_a_at--130--5151Chr01:24961021..24961045 (25 bp)
GCAACAAGCAATGCCGTTCCATGGC
LOC_Os01g43170
Os.11720.1.S1_a_at--1089--1531Chr01:24960983..24961007 (25 bp)
AGCATCTACCTCCAGGCTATGGAGG
LOC_Os01g43170
Os.11720.1.S1_a_at--620--4511Chr01:24960955..24960979 (25 bp)
GCCGCAGTTTCAGCAAGGTCCAAGG
LOC_Os01g43170
Os.11720.1.S1_a_at--233--6271Chr01:24960904..24960928 (25 bp)
GATGTACGGCGACCAGCAGTTTCCT
LOC_Os01g43170
Os.11720.1.S1_a_at--599--711Chr01:24960861..24960885 (25 bp)
ATGATGATGCCCTTTGCTGGGCAGG
LOC_Os01g43170
Os.11720.1.S1_a_at--887--6831Chr01:24960817..24960841 (25 bp)
GTTTCGCCCTTATAACAGCCATTAG
LOC_Os01g43170
Target Sequence 
ATTTCCAGGCTATGGATCTCCACAGTTTCCCCCAGGCTCAGCTCAAGCTCAAATGCATCAACAACATCCAGTCCAGGGAA
GCCAGCAGATGCCTGGCCAAATGAACCATCAACCACCTCCAGGATCGTTCATGCAGTACCCTGGCGACGGAGGCCGTCCA
GTTCAAGACGCACCTGGGCAACAAGCAATGCCGTTCCATGGCCATGGAGGAGGGCAGCATCTACCTCCAGGCTATGGAGG
CCAGCCGCAGTTTCAGCAAGGTCCAAGGCCACCTATGCCGCCGCAGCAGTTTCCGATGTACGGCGACCAGCAGTTTCCTC
CTGGTACGGGGCCCCAGATGATGATGCCCTTTGCTGGGCAGGGAGGAGGCCAGCAGCACCCGTTTCGCCCTTATAACAGC
CATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11720.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis