Browse Element(s) Details

Os.51057.1.S1_s_at

Description

gb:AK068431.1
DB_XREF= gi:32978449
TID=Os.51057.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51057 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154E14, full insert sequence.
FL= gb:AK068431.1 gb:AK060394.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g43150	11/11	ATP-dependent metalloprotease FtsH family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g43110	OsAffx.9127.2.S1_x_at	11/11	1	+	24919360..24923065	hypothetical protein
LOC_Os01g43120	Os.26991.1.S1_x_at	11/11	1	+	24925029..24928701	DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120	Os.52507.1.S1_at	11/11	1	+	24925029..24928701	DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120	Os.26517.1.S1_at	1/11	1	+	24925029..24928701	DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43130	Os.47953.1.S1_at	11/11	1	+	24929073..24932332	DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43140	Os.41251.1.A1_at	6/11	1	+	24938537..24942334	Lipase family protein, expressed
LOC_Os01g43150	Os.51057.1.S1_s_at	11/11	1	+	24942951..24950000	ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43150	Os.51057.1.S1_at	10/11	1	+	24942951..24950000	ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43160	Os.15014.1.S1_at	11/11	1	+	24956118..24959175	glycoside hydrolase family 28 protein, putative, expressed
LOC_Os01g43170	Os.11720.1.S1_a_at	11/11	1	+	24960613..24966124	Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os01g43180	OsAffx.11453.1.S1_at	11/11	1	+	24970072..24971066	Myb-like DNA-binding domain containing protein
LOC_Os01g43180	Os.37184.1.S1_at	2/11	1	+	24970072..24971066	Myb-like DNA-binding domain containing protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006510	biological_process	ATP-dependent proteolysis
GO:0010027	biological_process	thylakoid membrane organization and biogenesis
GO:0010205	biological_process	photoinhibition
GO:0010206	biological_process	photosystem II repair
GO:0005739	cellular_component	mitochondrion
GO:0009507	cellular_component	chloroplast
GO:0009535	cellular_component	thylakoid membrane (sensu Viridiplantae)
GO:0004176	molecular_function	ATP-dependent peptidase activity
GO:0008233	molecular_function	peptidase activity
GO:0008237	molecular_function	metallopeptidase activity
GO:0008270	molecular_function	zinc ion binding
GO:0016887	molecular_function	ATPase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51057.1.S1_s_at--1124--735	1	Chr01:24943522..24943546 (25 bp)	GTGAAACACTCACCGCAGATGAGAT	LOC_Os01g43150
Os.51057.1.S1_s_at--977--231	1	Chr01:24943493..24943517 (25 bp)	AAAGTGGTTCATCCCTACCAAGAAG	LOC_Os01g43150
Os.51057.1.S1_s_at--752--607	1	Chr01:24943445..24943469 (25 bp)	GAGGATTTTGCGCTAACTTAAAGGA	LOC_Os01g43150
Os.51057.1.S1_s_at--1076--95	1	Chr01:24943421..24943445 (25 bp)	AGGACCTTTTTGTTGCATCAAGGCA	LOC_Os01g43150
Os.51057.1.S1_s_at--661--695	1	Chr01:24943396..24943420 (25 bp)	GTAGACCCAGCTGTAAATCCATGTA	LOC_Os01g43150
Os.51057.1.S1_s_at--1129--959	1	Chr01:24943332..24943356 (25 bp)	TCATTTCTCCCATCTTGCAAATCGG	LOC_Os01g43150
Os.51057.1.S1_s_at--687--741	1	Chr01:24943233..24943257 (25 bp)	GTGTTGCACGCCGACCGATTATTAC	LOC_Os01g43150
Os.51057.1.S1_s_at--890--403	1	Chr01:24943218..24943242 (25 bp)	CGATTATTACTGTGGCGAGGCTCAT	LOC_Os01g43150
Os.51057.1.S1_s_at--176--341	1	Chr01:24943174..24943198 (25 bp)	CAGCAGCAATGCTCCTGGGTTGAGA	LOC_Os01g43150
Os.51057.1.S1_s_at--269--597	1	Chr01:24943153..24943177 (25 bp)	GAGAAGTTCATACTCAGCTTAGTTA	LOC_Os01g43150
Os.51057.1.S1_s_at--335--1003	1	Chr01:24943016..24943040 (25 bp)	TAGACTCTTTCTACCCAATTAATTT	LOC_Os01g43150

Target Sequence

GTGAAACACTCACCGCAGATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAG
GATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAA
TTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACATGGNAGTTTTGCAC
CACGCAAACTGGCAGGNAAGTTTTAAAAGATGGGAAGACCGGTTTTGCAANGGTGTTGCACGCCGACCGATTATTACTGT
GGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGA
AAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATAT
ATTTGCATATTTGCAAATCACATTTTTCTTAGACTCTTTCTACCCAATTAATTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis