Browse Element(s) Details


Os.41251.1.A1_at

Description gb:BX927619
DB_XREF= gi:41881842
DB_XREF=BX927619
CLONE=p572e03p3
TID=Os.41251.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41251 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1040D09.8 (B1040D09.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g431406/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43100Os.32938.1.S1_x_at6/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43100Os.32938.1.S1_at2/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43110OsAffx.9127.2.S1_x_at11/111+24919360..24923065hypothetical protein
LOC_Os01g43120Os.26991.1.S1_x_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.52507.1.S1_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.26517.1.S1_at1/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43130Os.47953.1.S1_at11/111+24929073..24932332DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43140Os.41251.1.A1_at6/111+24938537..24942334Lipase family protein, expressed
LOC_Os01g43150Os.51057.1.S1_s_at11/111+24942951..24950000ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43150Os.51057.1.S1_at10/111+24942951..24950000ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43160Os.15014.1.S1_at11/111+24956118..24959175glycoside hydrolase family 28 protein, putative, expressed
LOC_Os01g43170Os.11720.1.S1_a_at11/111+24960613..24966124Polypyrimidine tract-binding protein homolog 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41251.1.A1_at--295--1831Chr01:24941785..24941809 (25 bp)
ACGAGTCCAGCAACTACTTCCGGGC
LOC_Os01g43140
Os.41251.1.A1_at--1133--6211Chr01:24941973..24942004 (25 bp)
GAGGCCTGAGGCATTGATCGCCATT
LOC_Os01g43140
Os.41251.1.A1_at--28--551NONE
ATCGCCATTTGTTTTGCTCGCCTGA
NONE
Os.41251.1.A1_at--1021--4791NONE
GCTCGCCTGAGCAAGAGTGTACATT
NONE
Os.41251.1.A1_at--859--6092Chr01:24942026..24942050 (25 bp)
GAGTGTACATTCTTTGGGTTCTTTT
LOC_Os01g43140
Os.41251.1.A1_at--377--771Chr01:24942055..24942079 (25 bp)
CTTTGGTTGGTTCATCGAATCGTAC
LOC_Os01g43140
Os.41251.1.A1_at--359--311Chr01:24942092..24942117 (25 bp)
ATAGCCTCTCTCTTGTTGTAGGTTT
LOC_Os01g43140
Os.41251.1.A1_at--890--5571Chr01:24942152..24942176 (25 bp)
GAAATGGTAGTAGTGCCTGTCCCGG
LOC_Os01g43140
Os.41251.1.A1_at--564--8711NONE
TGTCCCGGTGGCTTGCTAAGCTCTG
NONE
Os.41251.1.A1_at--965--3731NONE
CTAAGCTCTGCAGGCTGCTGAATAA
NONE
Os.41251.1.A1_at--583--10071NONE
TAGTGAACTCTTGTAAATCTGCTGC
NONE
Target Sequence 
ACGAGTCCAGCAACTACTTCCGGGCGCTCAACGCGCTCACCAGGGTGCCGCGCCGCCGGAAGCAGCCGGAGATCGTGTGG
CAGCTGCCCGGCGTCGAGCGGCTGCAGCAGTATTGGTGGCCGGGGATCGCCGGCACCGTGTTCCCGGCGGCGGCGCCGGT
GTCGGTCCGGAACAAGGAGCTGGTCTCCGAGGCCTGAGGCATTGATCGCCATTTGTTTTGCTCGCCTGAGCAAGAGTGTA
CATTCTTTGGGTTCTTTTGGTTCTTTGGTTGGTTCATCGAATCGTACATACAAAAGGGTATAGCCTCTCTCTTGTTGTAG
GTTTTTTTTTCTTTTTTTCATGTGTAAATTTGTAAGGAAATGGTAGTAGTGCCTGTCCCGGTGGCTTGCTAAGCTCTGCA
GGCTGCTGAATAAAAATGGCAACTGTTNTTGCCATGGGTTCATGTGATATAGTGAACTCTTGTAAATCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41251.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis