Browse Element(s) Details


Os.32938.1.S1_x_at

Description gb:AK102319.1
DB_XREF= gi:32987528
TID=Os.32938.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein phosphatase 2C-like protein (B1040D09.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090G17, full insert sequence.
FL= gb:AK102319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g431006/11protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43050Os.37641.1.S1_at11/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43050Os.37641.2.S1_x_at10/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43060Os.33198.1.S1_at11/111+24895849..24898383expressed protein
LOC_Os01g43060OsAffx.13489.1.S1_at1/111+24895849..24898383expressed protein
LOC_Os01g43070Os.1500.2.S1_x_at10/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43070Os.1500.1.S1_at8/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43080Os.52056.1.S1_at11/111+24902574..24903707exonuclease family protein, expressed
LOC_Os01g43090Os.45885.1.S1_s_at11/111+24906478..24908925Auxin-induced protein PCNT115, putative, expressed
LOC_Os01g43100Os.32938.1.S1_x_at6/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43100Os.32938.1.S1_at2/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43110OsAffx.9127.2.S1_x_at11/111+24919360..24923065hypothetical protein
LOC_Os01g43120Os.26991.1.S1_x_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.52507.1.S1_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.26517.1.S1_at1/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43130Os.47953.1.S1_at11/111+24929073..24932332DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43140Os.41251.1.A1_at6/111+24938537..24942334Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32938.1.S1_x_at--772--5131Chr01:24914848..24914868 (21 bp)
GCAAAGCTATTGCACTCTCTAGTGA
LOC_Os01g43100
Os.32938.1.S1_x_at--883--5411Chr01:24915119..24915143 (25 bp)
GAAGCGATTCGTTGTTGCTGAGCCT
LOC_Os01g43100
Os.32938.1.S1_x_at--382--8671NONE
TGTGGTGTCCAATGAGCATGCCGTT
NONE
Os.32938.1.S1_x_at--170--4131Chr01:24916035..24916059 (25 bp)
CGCAGCCCGGAAGCTGGCAGAGATT
LOC_Os01g43100
Os.32938.1.S1_x_at--1157--3971Chr01:24916098..24916122 (25 bp)
CGTTGTAAAATTTCTCCATGCTAAG
LOC_Os01g43100
Os.32938.1.S1_x_at--303--9791Chr01:24916119..24916143 (25 bp)
TAAGATGGCCGTAGATGCTGCCTCG
LOC_Os01g43100
Os.32938.1.S1_x_at--372--631Chr01:24916133..24916157 (25 bp)
ATGCTGCCTCGTCTAGTGAGCGAAG
LOC_Os01g43100
Os.32938.1.S1_x_at--224--7331Chr01:24916148..24916172 (25 bp)
GTGAGCGAAGTTGATTTCTTCTGTT
NONE
Os.32938.1.S1_x_at--206--9531Chr01:24916178..24916202 (25 bp)
TCTCTTGTTCATTTTATCATCTTAA
NONE
Os.32938.1.S1_x_at--1019--411Chr01:24916193..24916217 (25 bp)
ATCATCTTAATCTGGAGTGCTGGCA
NONE
Os.32938.1.S1_x_at--185--3911Chr01:24916204..24916228 (25 bp)
CTGGAGTGCTGGCATCAATCACGGT
NONE
Target Sequence 
GCAAAGCTATTGCACTCTCTAGTGATCACAAACCAAATAGAAAAGATGAGCGGAAACGGATTGAGAATGCTGGAGGGGTT
GTGACATGGTCTGGGACATGGAGGGTTGGTGGTGTACTAGCAATGTCTCGGGCTTTTGGTAATCGTTTCTTGAAGCGATT
CGTTGTTGCTGAGCCTGAGGTCCAGGAACAAGAAATAGATGATGATTTGGAGTTTCTGATTTTGGCTAGTGATGGGCTGT
GGGATGTGGTGTCCAATGAGCATGCCGTTGCATTTGTAAAGGCGGAGGAGGGCCCTGAGGCCGCAGCCCGGAAGCTGGCA
GAGATTGCTTTTGCCCGTGGAAGCACCGACAATATAACATGCATCGTTGTAAAATTTCTCCATGCTAAGATGGCCGTAGA
TGCTGCCTCGTCTAGTGAGCGAAGTTGATTTCTTCTGTTCTATTTCTCTTGTTCATTTTATCATCTTAATCTGGAGTGCT
GGCATCAATCACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32938.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis