Browse Element(s) Details


Os.52056.1.S1_at

Description gb:AK064632.1
DB_XREF= gi:32974650
TID=Os.52056.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H01, full insert sequence.
FL= gb:AK064632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4308011/11exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43040Os.41257.1.S1_at11/111+24878962..24882427expressed protein
LOC_Os01g43050Os.37641.1.S1_at11/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43050Os.37641.2.S1_x_at10/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43060Os.33198.1.S1_at11/111+24895849..24898383expressed protein
LOC_Os01g43060OsAffx.13489.1.S1_at1/111+24895849..24898383expressed protein
LOC_Os01g43070Os.1500.2.S1_x_at10/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43070Os.1500.1.S1_at8/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43080Os.52056.1.S1_at11/111+24902574..24903707exonuclease family protein, expressed
LOC_Os01g43090Os.45885.1.S1_s_at11/111+24906478..24908925Auxin-induced protein PCNT115, putative, expressed
LOC_Os01g43100Os.32938.1.S1_x_at6/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43100Os.32938.1.S1_at2/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43110OsAffx.9127.2.S1_x_at11/111+24919360..24923065hypothetical protein
LOC_Os01g43120Os.26991.1.S1_x_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.52507.1.S1_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.26517.1.S1_at1/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52056.1.S1_at--905--7451Chr01:24903128..24903152 (25 bp)
GGTGGGTCGACCTCAGGGTCCACTT
LOC_Os01g43080
Os.52056.1.S1_at--611--3751Chr01:24903117..24903141 (25 bp)
CTCAGGGTCCACTTCGAGGCGGCGT
LOC_Os01g43080
Os.52056.1.S1_at--883--10751Chr01:24902909..24902933 (25 bp)
TTGAGCAAGCTCGTAAGCAGCAGCA
LOC_Os01g43080
Os.52056.1.S1_at--450--4311Chr01:24902723..24902747 (25 bp)
CCTTCTTTCTCATGGGCGGCGTAGT
LOC_Os01g43080
Os.52056.1.S1_at--460--8351Chr01:24902709..24902733 (25 bp)
GGCGGCGTAGTGGATTGTCCTATAA
LOC_Os01g43080
Os.52056.1.S1_at--290--8711Chr01:24902694..24902718 (25 bp)
TGTCCTATAAATTAGCAACTCTGTG
LOC_Os01g43080
Os.52056.1.S1_at--784--5151Chr01:24902680..24902704 (25 bp)
GCAACTCTGTGCTGGGAATTCTTAC
LOC_Os01g43080
Os.52056.1.S1_at--20--9131Chr01:24902671..24902695 (25 bp)
TGCTGGGAATTCTTACACACAAAAA
LOC_Os01g43080
Os.52056.1.S1_at--622--3431Chr01:24902621..24902645 (25 bp)
CAGATAGCCTTTTTTCATGTTCAGT
LOC_Os01g43080
Os.52056.1.S1_at--25--4451Chr01:24902615..24902639 (25 bp)
GCCTTTTTTCATGTTCAGTTTCAGT
LOC_Os01g43080
Os.52056.1.S1_at--373--3451Chr01:24902600..24902624 (25 bp)
CAGTTTCAGTTTCTGATCTAAATGA
LOC_Os01g43080
Target Sequence 
GGTGGGTCGACCTCAGGGTCCACTTCGAGGCGGCGTTCGGCGGCGGCGGGCAGCGGGTGAAGCTGCAGGAGGCGGTCAGG
GCGGCGGGGCTGGAGTGGGTGGGGCGCCTGCACTGCGGCCTCGACGACGCCTGCAACACGGCGCGCCTCCTCGTCGAGCT
CTTGCGCCGCGGCGTCCCCATCTCCATCACCGGCTCGCTGCCGGCCGCGCCGCCGCCGCTTGAGCAAGCTCGTAAGCAGC
AGCAGCAGCAGGAGATGCAGCAGCTGCTCGTCCCGTGCGGCGCGGCGGTGTGCTGCTACTGCGGCGTGGCGAGCACGGGA
GGGGTGATGGCGATGCCGGGGTCGACGCAGCGGCGGTGCTTCTACGGCTGCGGCAACTGGACGGCGGTGTCCGGGGCGAC
GTGCCCCTTCTTTCTCATGGGCGGCGTAGTGGATTGTCCTATAAATTAGCAACTCTGTGCTGGGAATTCTTACACACAAA
AAAAAATATTATGTAATCAAATTACAACAGATAGCCTTTTTTCATGTTCAGTTTCAGTTTCTGATCTAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis