Browse Element(s) Details


Os.45885.1.S1_s_at

Description gb:AU029622
DB_XREF= gi:3762870
DB_XREF=AU029622
CLONE=E31158_6Z
TID=Os.45885.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45885 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative auxin-induced protein (B1040D09.1), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4309011/11Auxin-induced protein PCNT115, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43040Os.41257.1.S1_at11/111+24878962..24882427expressed protein
LOC_Os01g43050Os.37641.1.S1_at11/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43050Os.37641.2.S1_x_at10/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43060Os.33198.1.S1_at11/111+24895849..24898383expressed protein
LOC_Os01g43060OsAffx.13489.1.S1_at1/111+24895849..24898383expressed protein
LOC_Os01g43070Os.1500.2.S1_x_at10/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43070Os.1500.1.S1_at8/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43080Os.52056.1.S1_at11/111+24902574..24903707exonuclease family protein, expressed
LOC_Os01g43090Os.45885.1.S1_s_at11/111+24906478..24908925Auxin-induced protein PCNT115, putative, expressed
LOC_Os01g43100Os.32938.1.S1_x_at6/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43100Os.32938.1.S1_at2/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43110OsAffx.9127.2.S1_x_at11/111+24919360..24923065hypothetical protein
LOC_Os01g43120Os.26991.1.S1_x_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.52507.1.S1_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.26517.1.S1_at1/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43130Os.47953.1.S1_at11/111+24929073..24932332DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45885.1.S1_s_at--702--7331Chr01:24907501..24907525 (25 bp)
GTGCAGCCCTGCTCAGCTAGCTTTA
LOC_Os01g43090
Os.45885.1.S1_s_at--972--3831Chr01:24907493..24907517 (25 bp)
CTGCTCAGCTAGCTTTAGCTTGGGT
LOC_Os01g43090
Os.45885.1.S1_s_at--591--3711Chr01:24907485..24907509 (25 bp)
CTAGCTTTAGCTTGGGTTCTTCATC
LOC_Os01g43090
Os.45885.1.S1_s_at--240--10351Chr01:24907480..24907504 (25 bp)
TTTAGCTTGGGTTCTTCATCAAGGG
LOC_Os01g43090
Os.45885.1.S1_s_at--533--9691Chr01:24906780..24906804 (25 bp)
TCACGGATGATGACCTGAAAGAGAT
LOC_Os01g43090
Os.45885.1.S1_s_at--804--8851Chr01:24906773..24906797 (25 bp)
TGATGACCTGAAAGAGATCTCTAGC
LOC_Os01g43090
Os.45885.1.S1_s_at--319--2791Chr01:24906735..24906759 (25 bp)
AAGATGTCGCTGGTGGAAGACAGTA
LOC_Os01g43090
Os.45885.1.S1_s_at--505--8191Chr01:24906721..24906745 (25 bp)
GGAAGACAGTATACCTCATTTGCAC
LOC_Os01g43090
Os.45885.1.S1_s_at--117--1271Chr01:24906633..24906657 (25 bp)
AGATATTGCCTGATTGCTATTCTCC
LOC_Os01g43090
Os.45885.1.S1_s_at--294--9151Chr01:24906607..24906631 (25 bp)
TGCGTATGTGCTGGATGGTGTTAAA
LOC_Os01g43090
Os.45885.1.S1_s_at--47--7311Chr01:24906600..24906624 (25 bp)
GTGCTGGATGGTGTTAAATGTATGC
LOC_Os01g43090
Target Sequence 
GTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGGAACAACCAAGA
TAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAACNTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTA
CGCGAAGAAGATGTCGCTGGTGGAAGACAGTATACCTCATTTGCACATTACACCTGGAAGTATGCTGACACGCCAAAGAA
GTAAAGCTAAAAAAATATTAGTATATCAAAGATATTGCCTGATTGCTATTCTCCNTGCGTATGTGCTGGATGGTGTTAAA
TGTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45885.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis