Browse Element(s) Details


Os.1500.2.S1_x_at

Description gb:NM_192810.1
DB_XREF= gi:34912703
GEN=P0686E09.22
TID=Os.1500.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686E09.22 (P0686E09.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0686E09.22 (P0686E09.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4307010/11oxygen-evolving complex, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43040Os.41257.1.S1_at11/111+24878962..24882427expressed protein
LOC_Os01g43050Os.37641.1.S1_at11/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43050Os.37641.2.S1_x_at10/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43060Os.33198.1.S1_at11/111+24895849..24898383expressed protein
LOC_Os01g43060OsAffx.13489.1.S1_at1/111+24895849..24898383expressed protein
LOC_Os01g43070Os.1500.2.S1_x_at10/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43070Os.1500.1.S1_at8/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43080Os.52056.1.S1_at11/111+24902574..24903707exonuclease family protein, expressed
LOC_Os01g43090Os.45885.1.S1_s_at11/111+24906478..24908925Auxin-induced protein PCNT115, putative, expressed
LOC_Os01g43100Os.32938.1.S1_x_at6/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43100Os.32938.1.S1_at2/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43110OsAffx.9127.2.S1_x_at11/111+24919360..24923065hypothetical protein
LOC_Os01g43120Os.26991.1.S1_x_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.52507.1.S1_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.26517.1.S1_at1/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1500.2.S1_x_at--302--10151Chr01:24900814..24900958 (25 bp)
TATCTCCTGATGCACGGCAACGTAT
LOC_Os01g43070
Os.1500.2.S1_x_at--551--9811Chr01:24900986..24901007 (22 bp)
TAACGTTGTCATCTCAGTCTCGATT
LOC_Os01g43070
Os.1500.2.S1_x_at--192--6611Chr01:24901235..24901259 (25 bp)
GATTGGGCCGCCAAATTCACGTTTT
LOC_Os01g43070
Os.1500.2.S1_x_at--1006--7371Chr01:24901428..24901452 (25 bp)
GTGACGACAGGCCAACGCATGACAG
LOC_Os01g43070
Os.1500.2.S1_x_at--743--1351Chr01:24901451..24901475 (25 bp)
AGAGAGTTCTGTCCTTGATGCACAC
LOC_Os01g43070
Os.1500.2.S1_x_at--321--6331Chr01:24901467..24901606 (25 bp)
GATGCACACTCTTCAGATGTCGATG
LOC_Os01g43070
Os.1500.2.S1_x_at--472--9431NONE
TCGGAAATCTCCTACACAATCTGCA
NONE
Os.1500.2.S1_x_at--881--431Chr01:24901825..24901849 (25 bp)
ATCTGTTTCGCCATAACGTAGCCTG
LOC_Os01g43070
Os.1500.2.S1_x_at--313--4471Chr01:24901845..24901868 (24 bp)
GCCTGCACTGCTGAACGAGATGGTT
LOC_Os01g43070
Os.1500.2.S1_x_at--375--7891Chr01:24901953..24901977 (25 bp)
GGTTACTTGTACTCCTTGAATGCTT
LOC_Os01g43070
Os.1500.2.S1_x_at--335--7771Chr01:24902218..24902242 (25 bp)
GGTGACATTGCAATTCGTTTCCTCC
LOC_Os01g43070
Target Sequence 
TATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGG
CCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGA
AAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATG
GAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCAT
AACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTAA
AATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1500.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis