Browse Element(s) Details


Os.11737.1.A1_at

Description gb:CB663996
DB_XREF= gi:29667721
DB_XREF=OSJNEd09H16.r
CLONE=OSJNEd09H16
TID=Os.11737.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.11737 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3089411/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30860NANA6+17914926..17916086WRKY DNA binding domain containing protein, expressed
LOC_Os06g30870NANA6+17925660..17926442hypothetical protein
LOC_Os06g30880OsAffx.15688.1.S1_at11/116+17936487..17936844hypothetical protein
LOC_Os06g30894Os.11737.1.A1_at11/116+17937102..17969693HEAT repeat family protein, expressed
LOC_Os06g30894OsAffx.27894.1.S1_at11/116+17937102..17969693HEAT repeat family protein, expressed
LOC_Os06g30910Os.16261.1.S1_at11/116+17972898..17977690CAAX amino terminal protease family protein, expressed
LOC_Os06g30920Os.50508.1.S1_at4/116+17983456..17983849hypothetical protein
LOC_Os06g30930Os.6225.2.S1_at11/116+17992240..17994417expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11737.1.A1_at--356--5591Chr06:17937658..17937682 (25 bp)
GAAATCGCGGAGTCAGGGTCATGAT
LOC_Os06g30894
Os.11737.1.A1_at--501--6131Chr06:17937630..17937654 (25 bp)
GAGGAGCCTTGGTCTAGACAAAATC
LOC_Os06g30894
Os.11737.1.A1_at--236--6931Chr06:17937532..17937556 (25 bp)
GTATGTGTTTGTCAAGTCCCATTCT
LOC_Os06g30894
Os.11737.1.A1_at--1053--3211Chr06:17937520..17937544 (25 bp)
CAAGTCCCATTCTTGATACTGAGCT
LOC_Os06g30894
Os.11737.1.A1_at--19--1631Chr06:17937390..17937414 (25 bp)
AGCTGGCAGCGGCATGTACTTCCAA
LOC_Os06g30894
Os.11737.1.A1_at--476--7011Chr06:17937375..17937399 (25 bp)
GTACTTCCAAAGTCACCACTATACG
LOC_Os06g30894
Os.11737.1.A1_at--581--9931Chr06:17937354..17937378 (25 bp)
TACGGACTGTTGTACATTTTACCCA
LOC_Os06g30894
Os.11737.1.A1_at--270--6591Chr06:17937275..17937299 (25 bp)
GATTGTCAGGACAAGCTGGACGGAT
LOC_Os06g30894
Os.11737.1.A1_at--790--2671Chr06:17937263..17937287 (25 bp)
AAGCTGGACGGATTGTATACATTAC
LOC_Os06g30894
Os.11737.1.A1_at--1053--9951Chr06:17937234..17937258 (25 bp)
TACCCTGTGCATGTGTTTGACCTCA
LOC_Os06g30894
Os.11737.1.A1_at--195--791Chr06:17937224..17937248 (25 bp)
ATGTGTTTGACCTCATGTCCCATGT
LOC_Os06g30894
Target Sequence 
GAAATCGCGGAGTCAGGGTCATGATTGTGAGGAGCCTTGGTCTAGACAAAATCTAGATCATTTGGGNACACATCCATACA
GGTGNCTGCATGCCAGGATTCTGGAAGTAAACAGCAAAAGCTCNTAGTATGTGTTTGTCAAGTCCCATTCTTGATACTGA
GCTCAAGTAATATTTGTTAGAATATGAGTTCTCACAAGTGCTGTNCAGAAGGAACTATTGCTCTGAAATGNNTGTCAGAT
TTNCAAGNCTGNGACTTTGGAGCAAACGNAAGAGCTGGCAGCGGCATGTACTTCCAAAGTCACCACTATACGGACTGTTG
TACATTTTACCCAACTTTTTNCTCATGTTTACATGCTGTGGAAATGTAGATCTATCAGATTANTCTTGATTGTCAGGACA
AGCTGGACGGATTGTATACATTACTGANTACCCTGTGCATGTGTTTGACCTCATGTCCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11737.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis