Browse Element(s) Details


Os.11739.2.A1_a_at

Description gb:CB624319
DB_XREF= gi:29619307
DB_XREF=OSIIEa12M24.r
CLONE=OSIIEa12M24
TID=Os.11739.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.11739 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_564631.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4540011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45350Os.15152.2.S1_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45350Os.15152.1.S1_a_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45360NANA5+26234495..26235451hypothetical protein
LOC_Os05g45370Os.11374.1.S1_s_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45370OsAffx.27318.1.S1_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45380OsAffx.27319.2.S1_s_at11/115+26245355..26246307expressed protein
LOC_Os05g45390OsAffx.27319.1.S1_at11/115+26247703..26248228hypothetical protein
LOC_Os05g45400Os.11739.2.A1_a_at11/115+26250545..26254060expressed protein
LOC_Os05g45410Os.40018.1.S1_at11/115+26261154..26263625HSF-type DNA-binding domain containing protein, expressed
LOC_Os05g45420Os.3393.1.S1_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45420Os.3393.1.S2_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45430OsAffx.27321.1.S1_at11/115+26273188..26275243Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11739.2.A1_a_at--942--9931Chr05:26251286..26251310 (25 bp)
TACGGGCAGAGTTTGTCCATTCATT
LOC_Os05g45400
Os.11739.2.A1_a_at--578--10571Chr05:26251097..26251117 (21 bp)
TTCTCTCGGGCGATCCAAGTGGAAT
LOC_Os05g45400
Os.11739.2.A1_a_at--1075--7051Chr05:26251048..26251072 (25 bp)
GTAATCACCTTGGAAACACCGCTGG
LOC_Os05g45400
Os.11739.2.A1_a_at--616--2471Chr05:26251034..26251058 (25 bp)
AACACCGCTGGACAACTTGGCTAGA
LOC_Os05g45400
Os.11739.2.A1_a_at--556--8311Chr05:26251016..26251040 (25 bp)
GGCTAGACCATCTTTATCTGTTCAA
LOC_Os05g45400
Os.11739.2.A1_a_at--66--8951Chr05:26250970..26250994 (25 bp)
TGACGTCTATTCCTGTAAGCTGTAC
LOC_Os05g45400
Os.11739.2.A1_a_at--326--10231Chr05:26250932..26250956 (25 bp)
TATTGCACGGTGTCCATACTTTCAT
LOC_Os05g45400
Os.11739.2.A1_a_at--1057--10851Chr05:26250862..26250886 (25 bp)
TTGGTTGAATCTCCTTTTAGTGCCC
LOC_Os05g45400
Os.11739.2.A1_a_at--622--10051Chr05:26250830..26250854 (25 bp)
TAGGTTTTAGCCCAGCACCAAAGTC
LOC_Os05g45400
Os.11739.2.A1_a_at--470--271Chr05:26250756..26250780 (25 bp)
ATATGTTGCGTCCATTTTGTCGTCA
LOC_Os05g45400
Os.11739.2.A1_a_at--339--271Chr05:26250689..26250713 (25 bp)
ATATGGGTTCCTGTTGCCATTGTTG
LOC_Os05g45400
Target Sequence 
TACGGGCAGAGTTTGTCCATTCATTGAAGGAGGAACTCAATGTAATGTGTGGTTTCTCTTGTGCCAGACATCCCTCGGCC
TTCACAGCTGTTTCTCTCGGGCGATCCAAGTGGAATGGACAAGTCGGCAGTTCAGGACTAGTAATCACCTTGGAAACACC
GCTGGACAACTTGGCTAGACCATCTTTATCTGTTCAATTGAATGGAGGTTTTGAGTTATGACGTCTATTCCTGTAAGCTG
TACATATCGCTGTATATATTGCACGGTGTCCATACTTTCATGTTTCTGGAGAGAGCTGCCAACCTATAAATTGTATTATG
TGGACGTTGGTTGAATCTCCTTTTAGTGCCCCTTATTATAGGTTTTAGCCCAGCACCAAAGTCGCAATTCAATAGGTAAG
GAAGTAAGTAGCTGGAGCTGTTGCAGGTGCGAATATGTTGCGTCCATTTTGTCGTCATCGCTTGTAAGTAGAATGTATGT
ATTGCTGTAGCACACCATAATATGGGTTCCTGTTGCCATTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11739.2.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis